Locus 1046

Sequence ID 3L_DroMel_CAF1
Location 3,086,304 – 3,086,401
Length 97
Max. P 0.904845
window1623

overview

Window 3

Location 3,086,304 – 3,086,401
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 96.22
Mean single sequence MFE -30.76
Consensus MFE -28.98
Energy contribution -29.10
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.99
Structure conservation index 0.94
SVM decision value 1.04
SVM RNA-class probability 0.904845
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3086304 97 - 23771897
CCGCUGGCCGAGGCAAUUAUUAUUAUCGUCCAGCGAAGACGUCGUUGUGCCAUUUGGCAAUAAAUUCAUCCGUCAUCCGGCUAGACGAGGCAAUAAA
.((((((.(((..............))).))))))..(.(.(((((..(((...((((.............))))...)))..))))).))...... ( -27.76)
>DroSec_CAF1 19092 97 - 1
CCGCUGGCCGAGGCAAUUAUUAUUGUCGUCCAGCGAAGACGUCGCUGUGCCAUUUGGCAAUAAAUUCAUCCGUCAUCCGGCCAGACGAGGCAAUAAA
.(((((((((.((((((....))))))...((((((.....))))))((((....))))..................))))))).)).......... ( -35.10)
>DroSim_CAF1 21159 97 - 1
CCGCUGGCCGAGGCAAUUAUUAUUGUCGUCCAGCGAAGACGUCGCUGUGCCAUUUGGCAAUAAAUUCAUCCGUCAUCCGGCCAGACGAGGCAAUAAA
.(((((((((.((((((....))))))...((((((.....))))))((((....))))..................))))))).)).......... ( -35.10)
>DroEre_CAF1 23465 97 - 1
CCGCUGGCCAAGGCAAUUAUUAUUAUCAUUCAGCGAAGACGUCGCUGUGCCAUUUGGCAAUAAAUUCAUCCGUCAUCCGGCCCGACGAGGCAAUAAA
..(((.(((((((((...............((((((.....))))))))))..)))))............((((.........)))).)))...... ( -25.06)
>consensus
CCGCUGGCCGAGGCAAUUAUUAUUAUCGUCCAGCGAAGACGUCGCUGUGCCAUUUGGCAAUAAAUUCAUCCGUCAUCCGGCCAGACGAGGCAAUAAA
.(((((((((.(((................((((((.....))))))((((....))))............)))...))))))).)).......... (-28.98 = -29.10 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:45 2006