Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,079,229 – 3,079,397 |
Length | 168 |
Max. P | 0.904297 |
Location | 3,079,229 – 3,079,342 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -28.90 |
Energy contribution | -28.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.18 |
Structure conservation index | 0.79 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3079229 113 - 23771897 CAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGUUGGGAUUCGAGUGACCAAGCAGCAACUAA---UUCCUCG---- ...((((((((.(((((((.(((.(((((....(((((.....)))))..((((.......))))....))))).))).))))))).)))....((......))..---.))))).---- ( -38.20) >DroVir_CAF1 29204 115 - 1 CUAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUGCAAACCGAGCGACUUAGCUGGCACUAG---AGCCACAAG-- ...(((....))).((((((..(.(((((....(((((.....)))))..((((.......))))....))))).)...)))))).(((......)))(((.....---.))).....-- ( -39.00) >DroGri_CAF1 24108 116 - 1 CUAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUACAACUGCGACGACUUAACCAGCACUAG---AACAGCG-CAA ...((((...(((((.......)))))..))))(((.((.(((((.(...((((.......))))..((((....))))).))))))))))........((.((..---...)).)-).. ( -34.10) >DroWil_CAF1 19736 113 - 1 CAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAAUUGGAAGUUGCCUGACCAAAUAGCCAUUUA---AGACACA---- ...(((((..(((((.......)))))......(((((.....)))))..((((.......))))....)))))...(((...(((......)))....)))....---.......---- ( -31.70) >DroMoj_CAF1 25438 117 - 1 CUAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUACGUUGCCAGCGACUUAACUGCCACUAG---AACCACUAGAA ...(((((..(((((.......)))))......(((((.....)))))..((((.......))))....)))))((.((.((((....)))).)).))....((((---.....)))).. ( -34.90) >DroAna_CAF1 11611 116 - 1 CAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGUUGGAGCAAGCGCGGCUAAACAGCCACUUGAGGCGCGUUG---- ...(((....)))..((((.(((.(((((....(((((.....)))))..((((.......))))....))))).))).))))..((((((((....)))).(....)))))....---- ( -42.90) >consensus CAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUGCAACUCGAGCGACUAAACAGCCACUAG___AGCCACG____ ...(((((..(((((.......)))))......(((((.....)))))..((((.......))))....))))).............................................. (-28.90 = -28.90 + 0.00)
Location | 3,079,262 – 3,079,374 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -35.25 |
Consensus MFE | -29.80 |
Energy contribution | -29.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.85 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3079262 112 + 23771897 CCAACUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUUGU---UGCUCCCCCCAGUCCGAA ...(((((((....(((.(((.(((...(((......)))..((((((.((.((((((.......))))).).)).))))))..)))...))).---.)))..)))))))..... ( -40.10) >DroVir_CAF1 29239 97 + 1 GCAUCUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUAGGUAAACUUUUU-------A-----------UUAUA ..((((((((.....((((.......))))....(((....((((....))))(((((.......))))).))))))))))).........-------.-----------..... ( -32.90) >DroGri_CAF1 24144 109 + 1 GUAUCUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUAGGUAAACUUUUUUGUACACAAUG---CUU---UUUU .(((((((((.....((((.......))))....(((....((((....))))(((((.......))))).))))))))))))...................---...---.... ( -34.20) >DroWil_CAF1 19769 109 + 1 CCAAUUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGAGAUAACUUUUUUG---UUCUU--UGCAGU-CAAA ((....)).......((((.......))))....((((((((((((((.((.((((((.......))))).).)).)))))...(((......)---)).))--))))))-)... ( -37.90) >DroMoj_CAF1 25475 109 + 1 GUAUCUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUAGGUAAACUUUUUU---CACAUUA---UUUGUUUAUU .(((((((((.....((((.......))))....(((....((((....))))(((((.......))))).)))))))))))).........---.......---.......... ( -34.20) >DroAna_CAF1 11647 102 + 1 CCAACUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACUUUUUUGU---UCUUU-------UU---C ((((..(((((((..((((.......))))...........((((....))))(((((.......)))))))))))))))).............---.....-------..---. ( -32.20) >consensus CCAACUGGGGAUAUAGCUCAGUGGUAGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUAGGUAAACUUUUUUGU___UACUU_______UUUAUA ......(((((((..((((.......))))...........((((....))))(((((.......))))))))))))...................................... (-29.80 = -29.80 + 0.00)
Location | 3,079,262 – 3,079,374 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -33.25 |
Consensus MFE | -28.90 |
Energy contribution | -28.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.87 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3079262 112 - 23771897 UUCGGACUGGGGGGAGCA---ACAAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGUUGG ..(.(((((((((.(((.---.......((((((((..(((....))).)))..)))))(((((.(..(((((.....)))))..).))).)).....)))...))))))))).) ( -42.70) >DroVir_CAF1 29239 97 - 1 UAUAA-----------U-------AAAAAGUUUACCUAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUGC .....-----------.-------.....((((((((.(((....)))))))..)))).(((((....(((((.....)))))..((((.......))))....)))))...... ( -29.00) >DroGri_CAF1 24144 109 - 1 AAAA---AAG---CAUUGUGUACAAAAAAGUUUACCUAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUAC ....---...---....((((........((((((((.(((....)))))))..)))).(((((....(((((.....)))))..((((.......))))....)))))..)))) ( -29.60) >DroWil_CAF1 19769 109 - 1 UUUG-ACUGCA--AAGAA---CAAAAAAGUUAUCUCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAAUUGG ((((-((((((--...((---(......)))...((.(((((...(((((.......)))))..))))).))..)))))))))).((((.......))))............... ( -36.90) >DroMoj_CAF1 25475 109 - 1 AAUAAACAAA---UAAUGUG---AAAAAAGUUUACCUAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUAC ..........---....(((---((.....)))))...(((((..(((((.......)))))......(((((.....)))))..((((.......))))....)))))...... ( -29.80) >DroAna_CAF1 11647 102 - 1 G---AA-------AAAGA---ACAAAAAAGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGUUGG .---..-------...((---((......)))).(((((((((..(((((.......)))))......(((((.....)))))..((((.......))))....)))))..)))) ( -31.50) >consensus UAUAAA_______AAAUA___ACAAAAAAGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCUGCAGUCGAAUGCUCUACCACUGAGCUAUAUCCCCAGAUGC ......................................(((((..(((((.......)))))......(((((.....)))))..((((.......))))....)))))...... (-28.90 = -28.90 + 0.00)
Location | 3,079,302 – 3,079,397 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -18.90 |
Energy contribution | -18.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.25 |
Structure conservation index | 0.89 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3079302 95 + 23771897 AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUUGUUGCU-----CCCCCCAGUCCGAAUACAAAG--UAUAUUUUUUUCUGAU ..((((((.((.((((((.......))))).).)).))))))................-----.....(((...(((((.....--..)))))....))).. ( -20.60) >DroSec_CAF1 12050 92 + 1 AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUUGCUGCU-----C---CCAGUUCAAAUAUAAAG--UAUAUUUUUUUCUGAU ..((((((.((.((((((.......))))).).)).))))))................-----.---.(((...(((((((...--)))))))....))).. ( -22.20) >DroSim_CAF1 12063 93 + 1 AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUUGCUGCU-----CC--CCAGUUCAAAUAUAAAG--UAUAUUUUUUUCUGAU ..((((((.((.((((((.......))))).).)).))))))................-----..--.(((...(((((((...--)))))))....))).. ( -22.20) >DroEre_CAF1 16238 92 + 1 AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUU----------GCUCCCCAGUUUUACUAAAAUUUAUAUAUUUUUGUCUGAU ..((((((.((.((((((.......))))).).)).))))))..........----------......(((....((.(((((......))))).))))).. ( -20.70) >DroYak_CAF1 11996 99 + 1 AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUUGUUGCUGCCUGCUCCCCAGUU---CUAAAAUGUAUAUAAUUUUCUCUGAU ..((((((.((.((((((.......))))).).)).))))))..((..(((((..((((.........)))).---.))))).))................. ( -22.60) >DroAna_CAF1 11687 86 + 1 AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACUUUUUUGUUCUU-----U-------UU---CCAACCUUUCUUUAU-UUUUCCUGAU ..((((((.((.((((((.......))))).).)).))))))................-----.-------..---...............-.......... ( -18.90) >consensus AGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUUGGUAAACCUUUUUGUUGCU_____C___CCAGUUC_AAUAAAAAG__UAUAUUUUUUUCUGAU ..((((((.((.((((((.......))))).).)).))))))............................................................ (-18.90 = -18.90 + 0.00)
Location | 3,079,302 – 3,079,397 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -17.38 |
Energy contribution | -17.55 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 0.76 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3079302 95 - 23771897 AUCAGAAAAAAAUAUA--CUUUGUAUUCGGACUGGGGGG-----AGCAACAAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU ................--..........(((.(((((((-----...........((....))..(....).(((((.......)))))..))))))).))) ( -24.90) >DroSec_CAF1 12050 92 - 1 AUCAGAAAAAAAUAUA--CUUUAUAUUUGAACUGG---G-----AGCAGCAAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU .((((....(((((((--...)))))))...))))---.-----...........((....)).(((((...(((((.......)))))..)))))...... ( -22.40) >DroSim_CAF1 12063 93 - 1 AUCAGAAAAAAAUAUA--CUUUAUAUUUGAACUGG--GG-----AGCAGCAAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU ..(((....(((((((--...)))))))...)))(--((-----((.........((((((((..(((....))).)))..)))))(....))))))..... ( -23.50) >DroEre_CAF1 16238 92 - 1 AUCAGACAAAAAUAUAUAAAUUUUAGUAAAACUGGGGAGC----------AAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU (((..((.(((((......))))).)).....(((..(((----------......)))..)))(((((...(((((.......)))))..))))).))).. ( -23.00) >DroYak_CAF1 11996 99 - 1 AUCAGAGAAAAUUAUAUACAUUUUAG---AACUGGGGAGCAGGCAGCAACAAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU ....((((..................---..(((.....))).............((((......(....).(((((.......)))))))))))))..... ( -22.30) >DroAna_CAF1 11687 86 - 1 AUCAGGAAAA-AUAAAGAAAGGUUGG---AA-------A-----AAGAACAAAAAAGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU ..........-........((((((.---..-------.-----..((((......))))....(((((...(((((.......)))))..))))))))))) ( -21.80) >consensus AUCAGAAAAAAAUAUA__CAUUUUAGU_GAACUGG___G_____AGCAACAAAAAGGUUUACCAAGGGGACACCCGGGUUUGAACCGGGGACCUCUCGAUCU (((....................................................((....)).(((((...(((((.......)))))..))))).))).. (-17.38 = -17.55 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:33 2006