Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,077,783 – 3,077,879 |
Length | 96 |
Max. P | 0.819547 |
Location | 3,077,783 – 3,077,879 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 78.89 |
Mean single sequence MFE | -20.96 |
Consensus MFE | -17.16 |
Energy contribution | -17.27 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.21 |
Mean z-score | -1.36 |
Structure conservation index | 0.82 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3077783 96 - 23771897 AAGUUUACCUAACCCAUCCCCAUUCUCUCUAGAUUCUUCUAGCUCUUGGAGGCUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACGC ............................(((((....)))))....((((((...(((((((((...))).......))))))....))))))... ( -20.71) >DroSec_CAF1 10493 96 - 1 AAGCUUACCUAACCCAUCCACUUCCUCUCUAGAUUCUUCUGGCUCUUGGAGGUUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACCC ............................(((((....)))))....((((((...(((((((((...))).......))))))....))))))... ( -21.11) >DroSim_CAF1 10509 96 - 1 AAGUUUACCUAACCCAUCCACUUCCAUUCUAGAUUCUUCUAGCUCUUGGAGGUUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACCC .(((((.......(((.(((((((((..(((((....)))))....)))))).))).....))).......)))))..((((....))))...... ( -21.64) >DroEre_CAF1 14678 96 - 1 AUGUUUACUUAACCAAUCCACUUACCUUAUAGAUCCUUCUUGCUCUUGGAGGUUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACGC ..............................................((((((...(((((((((...))).......))))))....))))))... ( -17.51) >DroMoj_CAF1 23962 92 - 1 AUUGUUUUCU----AAUCUAAAUAUCCCAUAGAUUCUGCUGGCCAUUGGCGGCUGGUCGUUCGGCACGCAAAAGUUCAAGGACAUGUCCGCCACGC ..........----((((((.........))))))..((((((.....((((((((....))))).)))..........(((....))))))).)) ( -22.90) >DroAna_CAF1 10218 87 - 1 AUGUCUUCCUUUCG---------AUUCUUUAGAUCCUUCUGGCUAUUGGUGGCUGGUCCUUCGGCACCCAGAAGUUCAAGGACAUGUCCGCCACCC ..............---------.....(((((....))))).....((((((..((((((..((........))..))))))......)))))). ( -21.90) >consensus AAGUUUACCUAACCCAUCCACUUACUCUCUAGAUUCUUCUGGCUCUUGGAGGCUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACCC ............................(((((....)))))....((((((...((((((.((...........))))))))....))))))... (-17.16 = -17.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:28 2006