Locus 1040

Sequence ID 3L_DroMel_CAF1
Location 3,077,783 – 3,077,879
Length 96
Max. P 0.819547
window1605

overview

Window 5

Location 3,077,783 – 3,077,879
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.89
Mean single sequence MFE -20.96
Consensus MFE -17.16
Energy contribution -17.27
Covariance contribution 0.11
Combinations/Pair 1.21
Mean z-score -1.36
Structure conservation index 0.82
SVM decision value 0.68
SVM RNA-class probability 0.819547
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3077783 96 - 23771897
AAGUUUACCUAACCCAUCCCCAUUCUCUCUAGAUUCUUCUAGCUCUUGGAGGCUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACGC
............................(((((....)))))....((((((...(((((((((...))).......))))))....))))))... ( -20.71)
>DroSec_CAF1 10493 96 - 1
AAGCUUACCUAACCCAUCCACUUCCUCUCUAGAUUCUUCUGGCUCUUGGAGGUUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACCC
............................(((((....)))))....((((((...(((((((((...))).......))))))....))))))... ( -21.11)
>DroSim_CAF1 10509 96 - 1
AAGUUUACCUAACCCAUCCACUUCCAUUCUAGAUUCUUCUAGCUCUUGGAGGUUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACCC
.(((((.......(((.(((((((((..(((((....)))))....)))))).))).....))).......)))))..((((....))))...... ( -21.64)
>DroEre_CAF1 14678 96 - 1
AUGUUUACUUAACCAAUCCACUUACCUUAUAGAUCCUUCUUGCUCUUGGAGGUUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACGC
..............................................((((((...(((((((((...))).......))))))....))))))... ( -17.51)
>DroMoj_CAF1 23962 92 - 1
AUUGUUUUCU----AAUCUAAAUAUCCCAUAGAUUCUGCUGGCCAUUGGCGGCUGGUCGUUCGGCACGCAAAAGUUCAAGGACAUGUCCGCCACGC
..........----((((((.........))))))..((((((.....((((((((....))))).)))..........(((....))))))).)) ( -22.90)
>DroAna_CAF1 10218 87 - 1
AUGUCUUCCUUUCG---------AUUCUUUAGAUCCUUCUGGCUAUUGGUGGCUGGUCCUUCGGCACCCAGAAGUUCAAGGACAUGUCCGCCACCC
..............---------.....(((((....))))).....((((((..((((((..((........))..))))))......)))))). ( -21.90)
>consensus
AAGUUUACCUAACCCAUCCACUUACUCUCUAGAUUCUUCUGGCUCUUGGAGGCUGGUCCUUUGGCACCCAGAAAUUCAAGGACAUGUCCUCCACCC
............................(((((....)))))....((((((...((((((.((...........))))))))....))))))... (-17.16 = -17.27 +   0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:28 2006