Locus 104

Sequence ID 3L_DroMel_CAF1
Location 358,838 – 358,952
Length 114
Max. P 0.777023
window144

overview

Window 4

Location 358,838 – 358,952
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 86.09
Mean single sequence MFE -34.64
Consensus MFE -21.38
Energy contribution -23.99
Covariance contribution 2.61
Combinations/Pair 1.09
Mean z-score -2.74
Structure conservation index 0.62
SVM decision value 0.55
SVM RNA-class probability 0.777023
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 358838 114 + 23771897
CUUGGCGAGACUGCAAUUGCCUCGAUUUGCCAAUUUUUGCUAAUGACAGGCGAUUUUUUCGCAUGUUAGACAGUGGCGAAUUUCGAGUGAAAUUA-AAUCCAGACCGCACAUCAU
..(((((.(.(((.((((.(((((((((((((....(((....(((((.((((.....)))).)))))..))))))))))..))))).).)))).-....))).)))).)).... ( -29.80)
>DroSec_CAF1 12996 114 + 1
CUUGGCGAGACUGCAAUUGGCUCGAUUUGCCAAUUUUUGCUAAUGACAGGCGAUUUUUUCGCAUGUUAGACAGUGGCGAAUUUCGCGCGAAAUUA-AAUCCAGACCGCACAUCAU
....((((((....(((((((.......)))))))(((((((.(((((.((((.....)))).))))).....)))))))))))))(((......-.........)))....... ( -33.96)
>DroSim_CAF1 13607 114 + 1
CUUGGCGAGACUGCAAUUGGCUCGAUUUGCCAAUUUUUGCUAAUGACAGGCGAUUUUUUCGCAUGUUAGACAGUGGCGAAUUUCGCGCGAAAUUA-AAUCCAGACCGCACAUCAU
....((((((....(((((((.......)))))))(((((((.(((((.((((.....)))).))))).....)))))))))))))(((......-.........)))....... ( -33.96)
>DroEre_CAF1 14291 110 + 1
UUUGGCGGGCCUGCAAUUGGCUCGGUUUGCCAAUUUUUGCUAAUGACAGGCGAUUU-UUCGCCUGUUAG----UGGCGAGUUUCGCGCGAAAUUAAAAUCCAGACCGCACAUCAU
..(((((((((.......)))))((((((........(((((.((((((((((...-.)))))))))).----)))))((((((....))))))......)))))))).)).... ( -44.30)
>DroYak_CAF1 14346 90 + 1
-------------------ACUCGAUUUGCCAAUUUUUGCUAAUGACAGGCGAUUUUUUCGCCUGUUAG----UG-CGAAUUU-GGGCGAAAUUAAAAUCCAGACCGCACAUCAU
-------------------......((((((....(((((...((((((((((.....)))))))))).----.)-))))...-.))))))........................ ( -31.20)
>consensus
CUUGGCGAGACUGCAAUUGGCUCGAUUUGCCAAUUUUUGCUAAUGACAGGCGAUUUUUUCGCAUGUUAGACAGUGGCGAAUUUCGCGCGAAAUUA_AAUCCAGACCGCACAUCAU
....((((((....(((((((.......)))))))(((((((.(((((.((((.....)))).))))).....)))))))))))))(((................)))....... (-21.38 = -23.99 +   2.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:29 2006