Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,074,339 – 3,074,455 |
Length | 116 |
Max. P | 0.979567 |
Location | 3,074,339 – 3,074,455 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.31 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -27.17 |
Energy contribution | -25.87 |
Covariance contribution | -1.30 |
Combinations/Pair | 1.15 |
Mean z-score | -1.91 |
Structure conservation index | 0.91 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3074339 116 + 23771897 UUUCUCUUCAAUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAAAAUAAUUUUUAG-UAGUGCCC-UGUCGCAAGACU-GGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))((((((....))))))-..(.((((-((((....))).-)))))). ( -33.60) >DroVir_CAF1 23601 115 + 1 CUUCUCUUCAGUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAAAUAAUUUUUGC-UAGUGCCC-GAUUGCAAAAU--UGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))................-..(.((((-((((....)))--)))))). ( -29.50) >DroGri_CAF1 19246 113 + 1 CUUCUCUUCAGUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAAAUAAUUUUUUG-CAGUGCCU-GAUUCCC--AU--CGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))................-..(.((((-(((....--))--)))))). ( -27.20) >DroWil_CAF1 14188 117 + 1 CUUCUCUUCAGUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAAAUAAUUUUUUGUUAGUGCCCUUGUUGCAAAAC--GGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))....(((((....))))).(.(((((.(((....)))--)))))). ( -27.80) >DroMoj_CAF1 20300 115 + 1 CUUCUCUUCAGUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAAAUAAUUUUUGC-UAGUGCCU-GAUUGCAAAAU--CGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))................-..(.((((-((((....)))--)))))). ( -29.40) >DroPer_CAF1 9895 117 + 1 CUUCUCUUCAGUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGGGCACUCUAAUGAGUCUAAAUUAAUUUUUUG-UAGUGCCC-UGUCGCAAGACUUGGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))................-..(.((((-((((....)))..)))))). ( -31.20) >consensus CUUCUCUUCAGUUGUCGAAUAAAUCUUUCGCCUUUUACUAAAGAUUUCCGUGGAGAGGAGCACUCUAAUGAGUCUAAAAUAAUUUUUUG_UAGUGCCC_GAUUGCAAAAC__GGGGCCA ((((((((((.....((...((((((((.(.......).)))))))).)))))))))))).((((....))))...................(.((((..(((....)))...))))). (-27.17 = -25.87 + -1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:27 2006