Locus 1038

Sequence ID 3L_DroMel_CAF1
Location 3,069,923 – 3,070,031
Length 108
Max. P 0.500000
window1603

overview

Window 3

Location 3,069,923 – 3,070,031
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.90
Mean single sequence MFE -32.72
Consensus MFE -20.67
Energy contribution -19.57
Covariance contribution -1.11
Combinations/Pair 1.37
Mean z-score -1.58
Structure conservation index 0.63
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3069923 108 - 23771897
CUUUCGUCGUGAACACCUCACGCAGUUGUACCACAUUCGUGUGCUGCAGCUUCUUCCACAUCUCCACCAGCGUCAUGCACUUGGUCGACUGCAGGCGGAAACCUAA-----------AA-
.(((((((((((.....))))(((((((.((((....(((((((((.....................))))).))))....))))))))))).)))))))......-----------..- ( -35.10)
>DroVir_CAF1 18022 109 - 1
CUUUUGUCGUAAACACCUCACGCAACUGCACCACAUUCGUGUGCUGCAGCUUCUUCCACAUCUCCACGAGCGCCAUACAUUUUGUGGACUGCAAACGAAAGCCUAG-----------AAA
(((((((.(....).......(((.(((((.((((....)))).))))).............((((((((..........)))))))).)))..))))))).....-----------... ( -24.10)
>DroPse_CAF1 2610 119 - 1
CUUUCGUCGUGAACACCUCGCGCAGUUGUACCACAUUCGUGUGCUGCAGUUUCUUCCACAUCUCCACCAGCGUCAUGCAUUUGGUUGACUGCAAGCGGAACCCUGCGGCGAGAGAGAGG-
((((((((((((.....))))(((((((.((((.((.(((((((((.....................))))).)))).)).)))))))))))..((((....)))))))))))).....- ( -41.00)
>DroGri_CAF1 13243 108 - 1
CUUUUGUCGUAAACACCUCGCGCAGCUGGACGACAUUCGUGUGUUGCAGUUUCUUCCACAUCUCGACGAGCGUCAUGCACUUCGUGGACUGCAAACGGAAGCCUGC-----------AA-
....((((((...((.((.....)).)).))))))........((((((...(((((.......(((....))).((((.((....)).))))...))))).))))-----------))- ( -28.60)
>DroWil_CAF1 7948 108 - 1
CUUUUGUCGUGAACACCUCACGUAGUUGCACCACAUUCGUGUGCUGCAACUUCUUCCACAUUUCCACCAAGGUCAUACACUUUGUUGACUGCAAACGAAAGCCUGC-----------AU-
.....(((((((.....))))(.(((((((.((((....)))).))))))).)..............((((((.....))))))..)))((((..(....)..)))-----------).- ( -28.60)
>DroPer_CAF1 2598 119 - 1
CUUUUGUCGUGAACACCUCGCGCAGUUGUACCACAUUCGUGUGCUGCAGUUUCUUCCACAUCUCCACCAGCGUCAUGCAUUUGGUUGACUGCAAGCGGAACCCUGCGGCGAGAGAGAGG-
((((((((((((.....))))(((((((.((((.((.(((((((((.....................))))).)))).)).)))))))))))..((((....)))))))))))).....- ( -38.90)
>consensus
CUUUUGUCGUGAACACCUCACGCAGUUGUACCACAUUCGUGUGCUGCAGCUUCUUCCACAUCUCCACCAGCGUCAUGCACUUGGUUGACUGCAAACGGAAGCCUGC___________AA_
.((((((.((((.....))))(((((((((.((((....)))).))))).............((.(((((..........))))).))))))..)))))).................... (-20.67 = -19.57 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:26 2006