Locus 1037

Sequence ID 3L_DroMel_CAF1
Location 3,067,142 – 3,067,241
Length 99
Max. P 0.742949
window1602

overview

Window 2

Location 3,067,142 – 3,067,241
Length 99
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 96.50
Mean single sequence MFE -24.30
Consensus MFE -20.10
Energy contribution -20.60
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.47
Structure conservation index 0.83
SVM decision value 0.45
SVM RNA-class probability 0.742949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3067142 99 - 23771897
GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU--GUUUGCUGUUGGCGCGAUA
...((((....))))....(((((((((((((...((((((((.....))))))))..........((((((.....)))--))).)))).))))))))). ( -25.00)
>DroSec_CAF1 27945 99 - 1
GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU--GUGUGCUGUUGGCGCGAUA
...((((....))))....((((((((((((((..((((((((.....))))))))...........(((((.....)))--))).)))).))))))))). ( -25.10)
>DroSim_CAF1 27926 99 - 1
GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU--GUGUGCUGUUGGCGCGAUA
...((((....))))....((((((((((((((..((((((((.....))))))))...........(((((.....)))--))).)))).))))))))). ( -25.10)
>DroYak_CAF1 28161 99 - 1
GAAUUACUAUAG--AGAGAGUUGCGUUACAGACGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUUUGUGUGUGCUGUUGGCGCGAUA
............--.....((((((((((((((..((((((((.....))))))))...........(((..(.....)..))))).))).))))))))). ( -22.00)
>consensus
GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU__GUGUGCUGUUGGCGCGAUA
...................(((((((((((((...((((((((.....)))))))).................((((.....)))))))).))))))))). (-20.10 = -20.60 +   0.50) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:25 2006