Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,067,142 – 3,067,241 |
Length | 99 |
Max. P | 0.742949 |
Location | 3,067,142 – 3,067,241 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -24.30 |
Consensus MFE | -20.10 |
Energy contribution | -20.60 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.47 |
Structure conservation index | 0.83 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3067142 99 - 23771897 GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU--GUUUGCUGUUGGCGCGAUA ...((((....))))....(((((((((((((...((((((((.....))))))))..........((((((.....)))--))).)))).))))))))). ( -25.00) >DroSec_CAF1 27945 99 - 1 GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU--GUGUGCUGUUGGCGCGAUA ...((((....))))....((((((((((((((..((((((((.....))))))))...........(((((.....)))--))).)))).))))))))). ( -25.10) >DroSim_CAF1 27926 99 - 1 GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU--GUGUGCUGUUGGCGCGAUA ...((((....))))....((((((((((((((..((((((((.....))))))))...........(((((.....)))--))).)))).))))))))). ( -25.10) >DroYak_CAF1 28161 99 - 1 GAAUUACUAUAG--AGAGAGUUGCGUUACAGACGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUUUGUGUGUGCUGUUGGCGCGAUA ............--.....((((((((((((((..((((((((.....))))))))...........(((..(.....)..))))).))).))))))))). ( -22.00) >consensus GAAUUACUAUAGUGAGAGAGUUGCGUUACAGCCGAUAAUUGAUUAGAAAUCAAUUAAACAAACAUCAACAUGAAUACUAU__GUGUGCUGUUGGCGCGAUA ...................(((((((((((((...((((((((.....)))))))).................((((.....)))))))).))))))))). (-20.10 = -20.60 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:25 2006