Locus 1036

Sequence ID 3L_DroMel_CAF1
Location 3,066,957 – 3,067,064
Length 107
Max. P 0.962654
window1601

overview

Window 1

Location 3,066,957 – 3,067,064
Length 107
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -21.95
Consensus MFE -20.40
Energy contribution -20.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.93
SVM decision value 1.54
SVM RNA-class probability 0.962654
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3066957 107 - 23771897
UCCUCACACUUUCCAACCCCACACCAAAGUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAACGCGCGUAGGU-CCAACAUUUUUGGAGUAUGCGCAAUAUAUA
...............................................(((((((......)))))))(((((((..(-((((.....))))).)))))))........ ( -22.80)
>DroSec_CAF1 27783 108 - 1
UCCCUACCCCUUCCAACCCCACACCGAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAACGCGCGUAGGCCCCAACAUUUUUGGAGUAUGCGCAAUAUAUA
...............................................(((((((......)))))))((((((..((.((((.....)))).))))))))........ ( -21.20)
>DroSim_CAF1 27739 108 - 1
UCCCUACCCCUUCCAACCCCAAAAAAAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAACGCGCGUAGGCCCCAACAUUUUUGGAGUAUGCGCAAUAUAUA
...............................................(((((((......)))))))((((((..((.((((.....)))).))))))))........ ( -21.20)
>DroYak_CAF1 28005 100 - 1
------CCCUUUCGAAG--CAAACCAAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAACGCGCGUAGGCCCCAACAUUUUUGGAGUAUGCGCAAUAUAUA
------..........(--(.............(((........)))(((((((......)))))))))(((((.((.((((.....)))).)).)))))........ ( -22.60)
>consensus
UCCCUACCCCUUCCAACCCCAAACCAAAAUUCUUGUUAUUUUCCACAGUUAUCGAUACGACGAUAACGCGCGUAGGCCCCAACAUUUUUGGAGUAUGCGCAAUAUAUA
...............................................(((((((......)))))))(((((((....((((.....))))..)))))))........ (-20.40 = -20.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:24 2006