Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,063,645 – 3,063,740 |
Length | 95 |
Max. P | 0.998213 |
Location | 3,063,645 – 3,063,740 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 66.33 |
Mean single sequence MFE | -19.67 |
Consensus MFE | -12.25 |
Energy contribution | -13.70 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.06 |
Mean z-score | -1.82 |
Structure conservation index | 0.62 |
SVM decision value | 3.04 |
SVM RNA-class probability | 0.998213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3063645 95 + 23771897 CUAUCGAAUUCCUAUGAUCUCGAAAACAUUAGUAUAGGGAUAGGGCUACCAUUAUAUACACCUUGUAGGUACUUCUAUCUAUAUGCA----UAUGUAUG ...((((..((....))..))))..((((..(((((.((((((((.((((..((((.......)))))))).)))))))).))))).----.))))... ( -23.50) >DroSec_CAF1 24376 96 + 1 CUAUCGAAU---UGUGAUCUCGAAAACAUUAGUAUAGGGAUAGGGCUACCAUUAUGUACACCUUGUAGGUACUUCUAUCUAUAUACAUAUGUAUGUAUG ...((((..---.......))))..((((..(((((.((((((((.((((......(((.....))))))).)))))))).)))))..))))....... ( -20.70) >DroSim_CAF1 24357 84 + 1 NNNNNNNNN---NNNNNNNNNNNNNNNNNUAGUAUAGGGAUAGG------------CACACCUUGUAGGUACUUCUAUCUAUAUACACACAUAUGUAUG .........---...................(((((.(((((((------------...(((.....)))...))))))).)))))............. ( -14.80) >consensus CUAUCGAAU___U_UGAUCUCGAAAACAUUAGUAUAGGGAUAGGGCUACCAUUAU_UACACCUUGUAGGUACUUCUAUCUAUAUACA_A__UAUGUAUG ...............................(((((.((((((((.((((.................)))).)))))))).)))))............. (-12.25 = -13.70 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:18 2006