Locus 1032

Sequence ID 3L_DroMel_CAF1
Location 3,063,645 – 3,063,740
Length 95
Max. P 0.998213
window1594

overview

Window 4

Location 3,063,645 – 3,063,740
Length 95
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 66.33
Mean single sequence MFE -19.67
Consensus MFE -12.25
Energy contribution -13.70
Covariance contribution 1.45
Combinations/Pair 1.06
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value 3.04
SVM RNA-class probability 0.998213
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3063645 95 + 23771897
CUAUCGAAUUCCUAUGAUCUCGAAAACAUUAGUAUAGGGAUAGGGCUACCAUUAUAUACACCUUGUAGGUACUUCUAUCUAUAUGCA----UAUGUAUG
...((((..((....))..))))..((((..(((((.((((((((.((((..((((.......)))))))).)))))))).))))).----.))))... ( -23.50)
>DroSec_CAF1 24376 96 + 1
CUAUCGAAU---UGUGAUCUCGAAAACAUUAGUAUAGGGAUAGGGCUACCAUUAUGUACACCUUGUAGGUACUUCUAUCUAUAUACAUAUGUAUGUAUG
...((((..---.......))))..((((..(((((.((((((((.((((......(((.....))))))).)))))))).)))))..))))....... ( -20.70)
>DroSim_CAF1 24357 84 + 1
NNNNNNNNN---NNNNNNNNNNNNNNNNNUAGUAUAGGGAUAGG------------CACACCUUGUAGGUACUUCUAUCUAUAUACACACAUAUGUAUG
.........---...................(((((.(((((((------------...(((.....)))...))))))).)))))............. ( -14.80)
>consensus
CUAUCGAAU___U_UGAUCUCGAAAACAUUAGUAUAGGGAUAGGGCUACCAUUAU_UACACCUUGUAGGUACUUCUAUCUAUAUACA_A__UAUGUAUG
...............................(((((.((((((((.((((.................)))).)))))))).)))))............. (-12.25 = -13.70 +   1.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:18 2006