Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 357,979 – 358,071 |
Length | 92 |
Max. P | 0.509198 |
Location | 357,979 – 358,071 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -15.35 |
Energy contribution | -14.97 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.29 |
Mean z-score | -2.22 |
Structure conservation index | 0.45 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 357979 92 + 23771897 -GGGGCUUGUGGAUACGGAUCUGCUCAACCUUCUGC--GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA---GCAUCUUCGUCAGAAAACUUG----------GCU -...(((((..((((((((.((((..........))--)).)))).))))..)))))(((((....(((((---.(......)))))).....))----------))) ( -37.60) >DroPse_CAF1 14602 107 + 1 UA-UGGUUAUGGAUAUGGAUCUCUGCAACCUUCUGGCGGCUUUCGCUAUCUGAGAGCGGCCAUCUCUCAGAGAGGCAUCUUCGUCAGAAAACUUGAGACUUUCAGGCU ..-.((((..(((........)))..))))(((((((((((((((.....))))))).(((.((((...))))))).....))))))))..((((((...)))))).. ( -34.60) >DroSim_CAF1 12779 92 + 1 -GGGGCUGGUGGAUACGGAUCUGCGCAACCUUCUGC--GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA---GCAUCUUCGUCAGAAAACUUG----------GCU -...(((.(..((((((((.(((((........)))--)).)))).))))..).)))(((((....(((((---.(......)))))).....))----------))) ( -34.30) >DroYak_CAF1 13489 92 + 1 -GGUGCUUGUGGAUACGGAUCUGCUCAACCUUCUGC--GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA---GCAUCUUCGUCAGAAAACUUG----------GCU -...(((((..((((((((.((((..........))--)).)))).))))..)))))(((((....(((((---.(......)))))).....))----------))) ( -37.60) >DroAna_CAF1 12314 92 + 1 UGGAGC-UGUGGAUAUGGAUCUGCCCAACCUUCUGU--GUUUCCGCUAUCUGCAGGCGGUGAUCUUUCUGA---UCAUCUUCAUAAGAAAACUUU----------GCU .....(-((..((((((((...((.((......)).--)).)))).))))..)))(((((((((.....))---)))))(((....)))......----------)). ( -26.20) >DroPer_CAF1 15678 107 + 1 UA-UGGUUAUGGAUAUGGAUCUCUGCAACCUUCUGGCGGCUUUCGCUAUCUGAGAGCGGCCAUCUCUCAGAGAGGCAUCUUCGUCAGAAAACUUGAGACUUUCAGGCU ..-.((((..(((........)))..))))(((((((((((((((.....))))))).(((.((((...))))))).....))))))))..((((((...)))))).. ( -34.60) >consensus _GGUGCUUGUGGAUACGGAUCUGCGCAACCUUCUGC__GGUUCCGCUAUCUGCAGGCGGCCAUCUCUCUGA___GCAUCUUCGUCAGAAAACUUG__________GCU ....(((((((((((((((...((..........)).....)))).))))))))))).((..((.....))...))...(((....)))................... (-15.35 = -14.97 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006