Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,032,935 – 3,033,055 |
Length | 120 |
Max. P | 0.831637 |
Location | 3,032,935 – 3,033,055 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -37.49 |
Consensus MFE | -27.11 |
Energy contribution | -26.78 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.38 |
Mean z-score | -1.66 |
Structure conservation index | 0.72 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3032935 120 + 23771897 CCAUCUACCUGAUCCUCAUACGCGCCGGCAUCAGCCGCCCGCACCUGCUGAGCUUCCUCUACAACAUGAGCUCCGGCACUCACCUGCCGGAGUCGCACGACGACCAUGUGAAGGUGCUGC .....(((((....(((((..(((.((((....))))..)))...((..(((....)))..))..)))))((((((((......))))))))(((((.(.....).)))))))))).... ( -38.90) >DroVir_CAF1 7321 120 + 1 AAAUAUUUUUGGUUUUAAUACGCGGCGGCAUUAGCCGUCCGCAUCUGCUCAGCUUUUUAUAUAACAUGAGCACCGGCACUCACCUGCCCGAGAAGAACAAUGAAUAUGUGAAGGUGCUGC ..((((((...(((((.....((((((((....)))).)))).((((((((...............))))).(.((((......)))).)))))))))...))))))............. ( -33.66) >DroGri_CAF1 13973 120 + 1 AAAUCUAUUUGGUUUUAAUACGCGGCGGCAUCAGUCGACCGCAUCUGUUGAGCUUCCUAUACAAUAUGAGCACGGGCACCCACCUGCCCGAGAAGAACAACGACUAUGUGAAGGUGCUCC (((((.....)))))......((((((((....)))).)))).......((((..(((.((((.........((((((......))))))((..(.....)..)).)))).))).)))). ( -35.50) >DroMoj_CAF1 1795 120 + 1 AAAUAUUUUUAGUUUUGAUUCGCGGCGGCAUCAGCCGUCCACACUUGCUCAGCUUUCUCUACAACAUGAGCACGGGCAGUCACCUGCCUGAGAAAAACAACCAGUAUAUAAAGGUGCUGC ...........(((((.....(.((((((....))))))).....((((((...............))))))(((((((....)))))))...)))))...((((((......)))))). ( -35.66) >DroAna_CAF1 1888 120 + 1 CCAUCUACCUUAUACUUAUACGCGGUGGCAUCAGCCGUCCGCACCUGCUGAGCUUCCUCUACAACAUGAGUUCCGGCACCCACUUGCCGGAGGUAAACAACGAGUACGUGAAGGUGCUGC .....((((....((((((..((((((((....)))).))))...((..(((....)))..))..))))))(((((((......))))))))))).......(((((......))))).. ( -39.80) >DroPer_CAF1 12193 120 + 1 CCAUUUAUCUGAUUCUCAUACGCGGCGGCAUCAGUCGCCCCCACCUCCUCAGCUUCCUGUACAACAUGAGCACGGGCACGCACCUGCCCGAGGUGAACAACGAGUAUGUGAAGGUGUUGC .....(((((...((.(((((.(((((((....))))))..((((((....((((..((.....)).))))..(((((......)))))))))))......).))))).))))))).... ( -41.40) >consensus AAAUCUAUCUGAUUCUAAUACGCGGCGGCAUCAGCCGUCCGCACCUGCUCAGCUUCCUCUACAACAUGAGCACCGGCACUCACCUGCCCGAGAAGAACAACGAGUAUGUGAAGGUGCUGC .....................((((((((....)))).)))).......((((..(((.((((.........((((((......)))))).(.....)........)))).))).)))). (-27.11 = -26.78 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:09 2006