| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,030,929 – 3,031,048 |
| Length | 119 |
| Max. P | 0.536565 |
| Location | 3,030,929 – 3,031,048 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.09 |
| Mean single sequence MFE | -48.93 |
| Consensus MFE | -20.19 |
| Energy contribution | -19.98 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3030929 119 + 23771897 AGGAGCAACAUGUCCGCAUAUCGGACAUUGUGGGUGCCCGCUGCAUGCGGCCCAAGAAGAGCCGGCGCCUGGCGAUGUCGGGCGCCUGUGCGUGCAGCUCCGGUAAUCCCA-AUUCGCCA .(((((...(((((((.....))))))).((((....))))((((((((((.(.....).)))((((((((((...))))))))))...))))))))))))((..(.....-..)..)). ( -60.70) >DroPse_CAF1 6155 119 + 1 AGGAGCAGACUGUGAAAAUAUGCAACAUUGUUGGGGCGCGUUGCAUGCGUCUAAAGAAGACCCGCCGCCUGGCCGUAGCCAGUGCGUGCGCCUGCAGCAACGGCAAUCCCA-ACUCCCCC .((((((...(((....))))))......((((((((.((((((.(((((((.....)))).(((((((((((....))))).))).)))...)))))))))))...))))-)))))... ( -50.30) >DroSim_CAF1 246 119 + 1 AGGAGCAGCAUGUCCGCAUCUCGGACAUUGUGGGUGCCCGCUGCAUGCGGCCCAAGAAGAGCCGGCGCCUGGCGAUGUCGGGCGCCUGUGCGUGCAGCUCUGGUAAUCCCA-AUUCGCCA ..(.((.(((((((((.....)))))).)))(((((((.((((((((((((.(.....).)))((((((((((...))))))))))...)))))))))...))))..))).-....))). ( -60.60) >DroWil_CAF1 5529 119 + 1 AAGAGCAAACCGUGAAAAUAUGCGAUAUUGUUGGAGCCAGAUGCAUGCGGCUAAAGAAGACCCGUCGCCUGGCCAUGGCCAAUGCCUGUGCCUGCAGCAGCGGAAAUCCCA-AUUCGCCG .....................((((.((((..(((.((...(((.((((((...((..((....))((.((((....))))..))))..))).))))))..))...)))))-)))))).. ( -33.40) >DroAna_CAF1 216 119 + 1 AGGAGCAACAAGUACGAAUCUUGGACAUCGUGGGAGCACGAUGCAUGCGUCCAAAGAAAAGUCGUCGCCUGGCCAUGUCCGGAGCAUGCGCCUGUAGUUCCGGAAAUCCAA-AUUCCCCG .(((((.(((.((((((.((((((((((((((....))))))(....))))).))))....)))).))..((((((((.....))))).)))))).)))))((((......-.))))... ( -41.20) >DroPer_CAF1 10607 120 + 1 AGGAGCAGACUGUGAAAAUAUGCAACAUUGUUGGGGCGCGUUGCAUGCGUCUAAAGAAGACCCGCCGCCUGGCCGUAGCCAGUGCGUGCGCCUGCAGCAACGGCAAUCCCAAACUCCCCC .((((((...(((....)))))).......(((((((.((((((.(((((((.....)))).(((((((((((....))))).))).)))...)))))))))))...)))))..)))... ( -47.40) >consensus AGGAGCAAAAUGUGAAAAUAUGCGACAUUGUGGGAGCCCGAUGCAUGCGGCCAAAGAAGACCCGCCGCCUGGCCAUGGCCAGUGCCUGCGCCUGCAGCACCGGAAAUCCCA_AUUCCCCA ................................((((...((((((.(((.............(((.((((((......)))).)))))))).))))))...((....))......)))). (-20.19 = -19.98 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:08 2006