Locus 1025

Sequence ID 3L_DroMel_CAF1
Location 3,019,531 – 3,019,650
Length 119
Max. P 0.702821
window1582

overview

Window 2

Location 3,019,531 – 3,019,650
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 96.36
Mean single sequence MFE -31.83
Consensus MFE -29.55
Energy contribution -30.33
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -1.84
Structure conservation index 0.93
SVM decision value 0.36
SVM RNA-class probability 0.702821
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3019531 119 - 23771897
GCCGCCCAAUGGGACCGAAUCUUCUAACAGGUUGUUGGGAAUUCUCACUUGGAAGAGGAAGCACAAGAAACGACCUCAAGAAGAAGGCGAACAAGCGAAACAAAACGGAACGGCAAAGC
(((((((...))).(((..((((((...((((((((.((..(((((........)))))..).)....))))))))..))))))..((......)).........)))..))))..... ( -35.90)
>DroSec_CAF1 53853 119 - 1
GCUGCCCAAUGGGACCGAAUCUUCUAACAGGUUGUUGGGAAUUCUCACUUGGAAGAGGAAGCAGAAGAAACGACCUCAAGAAGAAGGCGAACAAGCGAAACAAAACGGAAUGGCGAAGC
(((.(((...))).(((..((((((...((((((((..(..(((((........)))))..)......))))))))..))))))..((......)).........)))...)))..... ( -31.30)
>DroSim_CAF1 54675 116 - 1
G---CCCAAUGGGACCGAAUCUUCUAACAGGUUGUUGGGAAUUCUCACUUGGAAGAGGAAGCAGAAGAAACGACCUCAAGAAGAAGGCGAACAAGCGAAACAAAACGGAAUGGCGAAGC
.---(((...))).(((..((((((...((((((((..(..(((((........)))))..)......))))))))..))))))..((......)).........)))........... ( -28.30)
>consensus
GC_GCCCAAUGGGACCGAAUCUUCUAACAGGUUGUUGGGAAUUCUCACUUGGAAGAGGAAGCAGAAGAAACGACCUCAAGAAGAAGGCGAACAAGCGAAACAAAACGGAAUGGCGAAGC
(((((((...))).(((..((((((...((((((((..(..(((((........)))))..)......))))))))..))))))..((......)).........)))..))))..... (-29.55 = -30.33 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:06 2006