Locus 1024

Sequence ID 3L_DroMel_CAF1
Location 3,016,214 – 3,016,309
Length 95
Max. P 0.983673
window1580 window1581

overview

Window 0

Location 3,016,214 – 3,016,309
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 97.89
Mean single sequence MFE -22.27
Consensus MFE -22.27
Energy contribution -22.27
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 1.00
SVM decision value 0.46
SVM RNA-class probability 0.744042
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3016214 95 + 23771897
GAACAUUGCGUAUACGCAACGUUGUCGUCGGCGUAUUCGAGAGUUGAUGACAUGACCAACAAAUCGUAAAUUCGAUAAAAGGAAAUUAGAAGGAA
.(((.(((((....))))).)))(((((((((..........)))))))))....((.....((((......))))....))............. ( -22.60)
>DroSim_CAF1 51106 95 + 1
GAACAUUGCGUAUACGCAACGUUGUCGUCGGCGUAGUCGAGAGUUGAUGACAUGACCAACAAAUCGUAAAUUCGAUAAAAGGAAAUUAGAAGGAA
.(((.(((((....))))).)))(((((((((..........)))))))))....((.....((((......))))....))............. ( -22.60)
>DroYak_CAF1 52498 95 + 1
AAACAUUGCGUAUCCGCAACGUUGUCGUCGGCGUAGUCGAGAGUUGAUGACAUGACCAACAAAUCGUAAAUUCGAUAAAAGGAAAUUAGAAGGAA
.(((.(((((....))))).)))(((((((((..........)))))))))....((.....((((......))))....))............. ( -21.60)
>consensus
GAACAUUGCGUAUACGCAACGUUGUCGUCGGCGUAGUCGAGAGUUGAUGACAUGACCAACAAAUCGUAAAUUCGAUAAAAGGAAAUUAGAAGGAA
.(((.(((((....))))).)))(((((((((..........)))))))))....((.....((((......))))....))............. (-22.27 = -22.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 3,016,214 – 3,016,309
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 97.89
Mean single sequence MFE -22.73
Consensus MFE -22.30
Energy contribution -22.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.79
Structure conservation index 0.98
SVM decision value 1.95
SVM RNA-class probability 0.983673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3016214 95 - 23771897
UUCCUUCUAAUUUCCUUUUAUCGAAUUUACGAUUUGUUGGUCAUGUCAUCAACUCUCGAAUACGCCGACGACAACGUUGCGUAUACGCAAUGUUC
...................((((......))))((((((((....((..........))....)))))))).(((((((((....))))))))). ( -20.70)
>DroSim_CAF1 51106 95 - 1
UUCCUUCUAAUUUCCUUUUAUCGAAUUUACGAUUUGUUGGUCAUGUCAUCAACUCUCGACUACGCCGACGACAACGUUGCGUAUACGCAAUGUUC
...................((((......))))((((((((...(((..........)))...)))))))).(((((((((....))))))))). ( -23.50)
>DroYak_CAF1 52498 95 - 1
UUCCUUCUAAUUUCCUUUUAUCGAAUUUACGAUUUGUUGGUCAUGUCAUCAACUCUCGACUACGCCGACGACAACGUUGCGGAUACGCAAUGUUU
...................((((......))))((((((((...(((..........)))...)))))))).(((((((((....))))))))). ( -24.00)
>consensus
UUCCUUCUAAUUUCCUUUUAUCGAAUUUACGAUUUGUUGGUCAUGUCAUCAACUCUCGACUACGCCGACGACAACGUUGCGUAUACGCAAUGUUC
...................((((......))))((((((((...(((..........)))...)))))))).(((((((((....))))))))). (-22.30 = -22.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:05 2006