Locus 1022

Sequence ID 3L_DroMel_CAF1
Location 3,014,197 – 3,014,287
Length 90
Max. P 0.952682
window1578

overview

Window 8

Location 3,014,197 – 3,014,287
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 65.39
Mean single sequence MFE -19.50
Consensus MFE -5.06
Energy contribution -4.66
Covariance contribution -0.40
Combinations/Pair 1.62
Mean z-score -2.77
Structure conservation index 0.26
SVM decision value 1.42
SVM RNA-class probability 0.952682
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3014197 90 - 23771897
CUCGGCGAGAAAGCCUCACAAA----------AAACCACCCACAAUGGCUGCCUUUUACAUCCACUACUC-UUCGUAUAUAUUGUA--------UAUAUAUGCUAUAUA-----------
...((((((.....))).....----------...(((.......)))..))).................-...((((((((....--------.))))))))......----------- ( -14.30)
>DroSec_CAF1 48394 94 - 1
CUCGGCGAGGAAGCCUCACAAA----------AAGCCAUCCACAAUGGCUGCCUCUUACACCCACUACCC-UUCGUCCAUAUAGUAUA----UAUAUAUAUGCUAUAUA-----------
...(((((((...)))).....----------.((((((.....))))))))).................-.......((((((((((----(....))))))))))).----------- ( -25.80)
>DroSim_CAF1 49086 98 - 1
CUCGGCGAGAAAGCCUCACAAA----------AAGCCAUCCACAAUGGCUGCCUUUUACACCCACUACCC-UUCGUCCAUAUAGUAUAUGUAUAUAUAUAUGCCAUAUA-----------
...((((((.....))).....----------.((((((.....))))))))).................-.......((((.((((((((....)))))))).)))).----------- ( -22.00)
>DroYak_CAF1 49732 89 - 1
CUCGGCGAGAAAGCCUCACAAA----------AAUCCACCAACAAUCGUUGCCUCUUAC------UACC--------CACAAAGUAAG----AGUAUAUAUGCUAUAUACACCCUGU---
...((((((.....))).....----------........(((....))))))((((((------(...--------.....))))))----)(((((((...))))))).......--- ( -17.50)
>DroAna_CAF1 47641 105 - 1
CCUGGCAAGGAUGUCUCAAAAAAUAAGGAGGAAAUACACCCACAAAAGUUGGCUGUUACAACUGCUUUCAAGUUAGAAAUAUACUA--------UAAACAUACUGUAUG-------GGUG
(((....)))...((((..........)))).....((((((....(((((.......))))).......(((((....)).))).--------.............))-------)))) ( -17.90)
>consensus
CUCGGCGAGAAAGCCUCACAAA__________AAGCCACCCACAAUGGCUGCCUCUUACACCCACUACCC_UUCGUACAUAUAGUA________UAUAUAUGCUAUAUA___________
...(((......))).............................(((((....................................................))))).............. ( -5.06 =  -4.66 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:03 2006