Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,013,947 – 3,014,063 |
Length | 116 |
Max. P | 0.500000 |
Location | 3,013,947 – 3,014,063 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -33.38 |
Consensus MFE | -23.40 |
Energy contribution | -25.65 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.21 |
Mean z-score | -1.49 |
Structure conservation index | 0.70 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3013947 116 + 23771897 CGGAAGUUAAG--AAAGACUAAGACGUCCACCAAAAUGGAUCCCACUUC-CCAUUUGCAUACCCAAGGGGCUCUCAUAUCG-CCGGGUUCCUGGUUCUCAAGUGAUAAGUGGGUUCUAUU .(((.(((...--.........))).))).....((((((.(((((((.-.((((((...(((..((((((((........-..)))))))))))...))))))..))))))).)))))) ( -38.30) >DroSim_CAF1 48835 116 + 1 CGGAAGUUAAG--AAAGACUAAGGCGUCCACCAAAAUGGAUCCCACUUC-GCAUUUGCAUACCCAAGGGGCUCUCAUAUCG-CCGGGCUCCUGGUUCUCAAGUGAUAAGUGGGUUCUAUU .(((.(((...--.........))).))).....((((((.(((((((.-.((((((...(((..((((((((........-..)))))))))))...))))))..))))))).)))))) ( -40.40) >DroYak_CAF1 49475 116 + 1 CGGAAGUUAAA--AAAGACUCAGGCGCCCACCAAAAUGGAUUCCACUUC-CUAUUUGCAUGCCCAAGAGGCUCUCAUAUCG-UCGAGCUCCUGAUUCUUAAGUGAUAAGUGGGGUCUAUU .((.((((...--...))))..((...)).))..((((((((((((((.-.((((((........((..((((........-..))))..))......))))))..)))))))))))))) ( -28.64) >DroAna_CAF1 47373 113 + 1 CGGAAGUUAAAAAAAAGAUUUAGUUGGCCACCAAAAUGGAUUCCAUUUCCCCAUUUGCAUACCCAAGAGGCUCUCGUAUCGGCCAAGUUGGUGGCUUUUA-------AGUGGCGGCUAUU (....)...........((((((..((((((((((((((...........))))))............((((........))))....)))))))).)))-------))).......... ( -26.20) >consensus CGGAAGUUAAA__AAAGACUAAGGCGUCCACCAAAAUGGAUCCCACUUC_CCAUUUGCAUACCCAAGAGGCUCUCAUAUCG_CCGAGCUCCUGGUUCUCAAGUGAUAAGUGGGGUCUAUU .((.((((........))))..(.....).))..((((((((((((((...((((((...(((..((((((((...........)))))))))))...))))))..)))))))))))))) (-23.40 = -25.65 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:02 2006