Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,013,319 – 3,013,528 |
Length | 209 |
Max. P | 0.839949 |
Location | 3,013,319 – 3,013,427 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 95.43 |
Mean single sequence MFE | -37.75 |
Consensus MFE | -32.65 |
Energy contribution | -32.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.86 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3013319 108 - 23771897 GCGCUUAAGUCAAUUUGAGUUUGACUCGGGGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG---GACAUCGAAGAGCGGCAAAGUUCAGCUGGCCA ...((..((((((.......))))))..))..((....)).(((((..........(((((((..(......)..)---))))))...((((......))))..))))).. ( -36.40) >DroSec_CAF1 47546 108 - 1 GCGCUUAAGUCAAUUUGAGUUUGACUCGGCGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG---GACAUCGCAGAGCGGCAAAGUUCAGCUGGCCA .((((..((((((.......)))))).)))).((....)).(((((......((..(((((((..(......)..)---)))))))).((((......))))..))))).. ( -38.40) >DroSim_CAF1 48183 108 - 1 GCGCUUAAGUCAAUUUGAGUUUGACUCGGCGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG---GACAUCGCAGAGCAGCAAAGUUCAGCUGGCCA .((((..((((((.......)))))).)))).((....)).(((((......((..(((((((..(......)..)---)))))))).((((......))))..))))).. ( -37.70) >DroYak_CAF1 48844 111 - 1 GCGCUUAAGUCAAUUUGAGUUUGACUCGGAGAGCGAAGGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAGGAGGACAGCGCCGAGCAGCAAAGUUCAGCUGGCCA (((((....((.....))((((..(((((.((((....)).....(((((((....))))))).....)).)))))..)))))))))....((((........)))).... ( -38.50) >consensus GCGCUUAAGUCAAUUUGAGUUUGACUCGGCGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG___GACAUCGCAGAGCAGCAAAGUUCAGCUGGCCA ........((((......(((...(((((.((((....)).....(((((((....))))))).....)).)))))...)))...((.((((......)))).)))))).. (-32.65 = -32.90 + 0.25)
Location | 3,013,350 – 3,013,462 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 89.43 |
Mean single sequence MFE | -34.23 |
Consensus MFE | -27.92 |
Energy contribution | -29.43 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.82 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3013350 112 - 23771897 CUGACUAAUGAAAGUGGACAGGGGCGGCAGAAGAAGCGCUUAAGUCAAUUUGAGUUUGACUCGGGGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG---G (.((((.....((((.(((..(((((.(.......))))))..))).)))).)))).).(((((((.((....))..)).(((((((....)))))))........)))))---. ( -34.70) >DroSec_CAF1 47577 112 - 1 GUGACAAAUGAAAGUGGACAGGGGCUGCAGAAGAAGCGCUUAAGUCAAUUUGAGUUUGACUCGGCGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG---G ....(((((..((((.(((..((((.((.......))))))..))).))))..))))).(((((.((((....)).....(((((((....))))))).....)).)))))---. ( -39.10) >DroSim_CAF1 48214 112 - 1 GUGACUAAUGAAAGUGGACAGGGGCGGCAGAAGAAGCGCUUAAGUCAAUUUGAGUUUGACUCGGCGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG---G ..((((.....((((.(((..(((((.(.......))))))..))).)))).))))...(((((.((((....)).....(((((((....))))))).....)).)))))---. ( -35.10) >DroYak_CAF1 48875 104 - 1 UGCACUAAUGAAAGUGGACG-----------AAAAGCGCUUAAGUCAAUUUGAGUUUGACUCGGAGAGCGAAGGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAGGAGG ..((((......))))....-----------......(((((((....)))))))....(((((.((((....)).....(((((((....))))))).....)).))))).... ( -28.00) >consensus GUGACUAAUGAAAGUGGACAGGGGCGGCAGAAGAAGCGCUUAAGUCAAUUUGAGUUUGACUCGGCGAGCGAAAGCAGCCAGGACAUCGCAGGAUGUCUCAGAAUCACCGAG___G ....(.(((..((((.(((..((((.((.......))))))..))).))))..))).).(((((.((((....)).....(((((((....))))))).....)).))))).... (-27.92 = -29.43 + 1.50)
Location | 3,013,427 – 3,013,528 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.74 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -32.48 |
Energy contribution | -32.27 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.12 |
Mean z-score | -1.98 |
Structure conservation index | 0.93 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3013427 101 - 23771897 CAGAAUCUUGAGUCCUGAGUUCUGGGCACUGAGCCCAGAACCAUCAGCACCUUCCCUUUCUCCUUUCUGACUAAUGAAAGUGGACAGGGGCGGCAGAAGAA .....((((..((((((((((((((((.....)))))))))..)))).....(((((.((..(((((........)))))..)).))))).)))..)))). ( -40.10) >DroSec_CAF1 47654 101 - 1 CAGAGUCUUGAGUCCUGAGUUCUGGGCACUGAGUCCUGAACCAUCAGCUCCUCCUCUCUCCCCUUUGUGACAAAUGAAAGUGGACAGGGGCUGCAGAAGAA .....((((......((.((((.((((.....)))).)))))).((((((((((.((.((...((((...)))).)).)).)))..)))))))...)))). ( -27.30) >DroSim_CAF1 48291 101 - 1 CAGAGUCUUGAGUCCUGAGUUCUGGGCACUGAGCCCAGAACCAUCAGCUCCUCCUCUCUCCCCUUUGUGACUAAUGAAAGUGGACAGGGGCGGCAGAAGAA .....((((.....(((((((((((((.....)))))))))..))))((((.(((((.(((.((((((.....)).)))).))).))))).)).)))))). ( -37.60) >consensus CAGAGUCUUGAGUCCUGAGUUCUGGGCACUGAGCCCAGAACCAUCAGCUCCUCCUCUCUCCCCUUUGUGACUAAUGAAAGUGGACAGGGGCGGCAGAAGAA .....((((..((((((((((((((((.....)))))))))..)))).....(((((.(((.((((..........)))).))).))))).)))..)))). (-32.48 = -32.27 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:01 2006