Locus 1019

Sequence ID 3L_DroMel_CAF1
Location 3,013,173 – 3,013,291
Length 118
Max. P 0.510339
window1573

overview

Window 3

Location 3,013,173 – 3,013,291
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.30
Mean single sequence MFE -29.97
Consensus MFE -26.22
Energy contribution -26.46
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.24
Structure conservation index 0.87
SVM decision value -0.05
SVM RNA-class probability 0.510339
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3013173 118 + 23771897
CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGACGACAGCAACUGGAAAAAC
........(((((((((((.........((.....))..........)))))))))))........((((((((((..........))--)))))(((((....)))))...)))..... ( -29.21)
>DroSec_CAF1 47400 118 + 1
CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGUCGACAGCAAGUGGAAAAAC
....((..(((((((((((.........((.....))..........)))))))))))..((.....(((((((((..(((((....)--))))...)).)))))))....))))..... ( -30.41)
>DroSim_CAF1 48037 118 + 1
CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGACGACAGCAACUGGAAAAAC
........(((((((((((.........((.....))..........)))))))))))........((((((((((..........))--)))))(((((....)))))...)))..... ( -29.21)
>DroYak_CAF1 48688 118 + 1
CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGACGACAGCAACUGGAAAAAC
........(((((((((((.........((.....))..........)))))))))))........((((((((((..........))--)))))(((((....)))))...)))..... ( -29.21)
>DroAna_CAF1 46703 118 + 1
CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAA--ACGGCAGUAAGAACAAUCUGUCGAGGGUUUUGGGCGCCUCUCGAUUGCUGACGACAGCAACUGGAAAAAC
....((...((((..((((((...(((((......(((...(((....--.((((((..........))))))..)))....)))......)))))..))))))..))))...))..... ( -31.80)
>consensus
CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC__UCGAUUGCUGACGACAGCAACUGGAAAAAC
....((...((((..((((((...(((((......(((....(((......((((((..........))))))......))))))......)))))..))))))..))))...))..... (-26.22 = -26.46 +   0.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:58 2006