Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,013,173 – 3,013,291 |
Length | 118 |
Max. P | 0.510339 |
Location | 3,013,173 – 3,013,291 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.30 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -26.22 |
Energy contribution | -26.46 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.24 |
Structure conservation index | 0.87 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3013173 118 + 23771897 CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGACGACAGCAACUGGAAAAAC ........(((((((((((.........((.....))..........)))))))))))........((((((((((..........))--)))))(((((....)))))...)))..... ( -29.21) >DroSec_CAF1 47400 118 + 1 CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGUCGACAGCAAGUGGAAAAAC ....((..(((((((((((.........((.....))..........)))))))))))..((.....(((((((((..(((((....)--))))...)).)))))))....))))..... ( -30.41) >DroSim_CAF1 48037 118 + 1 CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGACGACAGCAACUGGAAAAAC ........(((((((((((.........((.....))..........)))))))))))........((((((((((..........))--)))))(((((....)))))...)))..... ( -29.21) >DroYak_CAF1 48688 118 + 1 CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC--UCGAUUGCUGACGACAGCAACUGGAAAAAC ........(((((((((((.........((.....))..........)))))))))))........((((((((((..........))--)))))(((((....)))))...)))..... ( -29.21) >DroAna_CAF1 46703 118 + 1 CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAA--ACGGCAGUAAGAACAAUCUGUCGAGGGUUUUGGGCGCCUCUCGAUUGCUGACGACAGCAACUGGAAAAAC ....((...((((..((((((...(((((......(((...(((....--.((((((..........))))))..)))....)))......)))))..))))))..))))...))..... ( -31.80) >consensus CUUAUCAAAUUGUCAUCGUCAUUAAAUCGCAAUUAGCCAACACCACAGCGAUGGCAGUAACAACAAUCUGUCGAGGAUUUGGGGCGCC__UCGAUUGCUGACGACAGCAACUGGAAAAAC ....((...((((..((((((...(((((......(((....(((......((((((..........))))))......))))))......)))))..))))))..))))...))..... (-26.22 = -26.46 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:58 2006