Locus 1017

Sequence ID 3L_DroMel_CAF1
Location 3,011,939 – 3,012,033
Length 94
Max. P 0.898997
window1571

overview

Window 1

Location 3,011,939 – 3,012,033
Length 94
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 92.75
Mean single sequence MFE -33.98
Consensus MFE -29.40
Energy contribution -30.65
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.87
SVM decision value 1.01
SVM RNA-class probability 0.898997
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 3011939 94 - 23771897
ACUCUCGAAUCAAUUAAUGCGCUCCAUGGCCAUGAAAGUGGCGAGUGGCGAUAAGCCAGCUCCAACCCAUGUGGCCCCCCAACUGGGAGCUGGC-----
...................(((..(.(.(((((....))))).))..)))....(((((((((........(((....)))....)))))))))----- ( -35.00)
>DroSec_CAF1 46222 94 - 1
ACUCUCGAAUCAAUUAAUGCGCUCCAUGGCCAUGAAAGUGGCGAGUGGCGAUAAGCCAGCUCCAACCCAUGUGGCCCCCCAACUGGGAGCUGAC-----
..................((((..(((((((((....)))))(((((((.....)))).))).....))))..))..(((....))).))....----- ( -33.00)
>DroSim_CAF1 46846 94 - 1
ACUCUCGAAUCAAUUAAUGCGCUCCAUGGCCAUGAAAGUGGCGAGUGGCGAUAAGCCAGCUCCAACCCAUGUGGCCCCCCAACUGGGAGCUGGC-----
...................(((..(.(.(((((....))))).))..)))....(((((((((........(((....)))....)))))))))----- ( -35.00)
>DroYak_CAF1 47472 94 - 1
ACUCUCGAAUCAAUUAAUGCGCUCCAUGGCCAUGAAAGUGGCGAGUGGCGAUAAGCCAGCUACACCCCAUGUGGCC-----ACUGGCAGCUGGCCUGGC
.......................(((.(((((((..((((((.((((((.....)))).)).(((.....))))))-----)))..))..)))))))). ( -32.90)
>consensus
ACUCUCGAAUCAAUUAAUGCGCUCCAUGGCCAUGAAAGUGGCGAGUGGCGAUAAGCCAGCUCCAACCCAUGUGGCCCCCCAACUGGGAGCUGGC_____
...................(((..(.(.(((((....))))).))..)))....(((((((....((((..(((....)))..)))))))))))..... (-29.40 = -30.65 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:56 2006