Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,011,499 – 3,011,606 |
Length | 107 |
Max. P | 0.739684 |
Location | 3,011,499 – 3,011,606 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.36 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -27.07 |
Energy contribution | -27.30 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.95 |
Structure conservation index | 0.87 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3011499 107 + 23771897 AACUG------------GCUAAAUGUUGAACGGCACACGCAAGCGUGUUAAAAAAAAAGGUUUGCUCAGUGAACCUAAAAAAUCGAGUUCAAAGAGUGAGGGGUGUUUUAAAUGGGCGU ..((.------------(((.....(((((((((((.(....).)))))........(((((..(...)..)))))..........))))))..))).))....((((.....)))).. ( -27.20) >DroSec_CAF1 45770 118 + 1 AACUGGCUUUUGUUCUGGCUAAAUGUUGAACGGCACACGCAAGCGUGUUAAAA-AAAAGCUUUGCUCAAUGAACCUAAAAAAUCGAGUUCAAAGAGCCAGGGGCGUUUAAAAUGGGCGU ..(((((((((((((.(((.....)))))))(((((.(....).)))))....-))))))...((((..((((((.........).)))))..)))))))..((((((.....)))))) ( -32.30) >DroSim_CAF1 46394 119 + 1 AACUGGCUUUUGUUCUGGCUAAAUGUUGAACGGCACACGCAAGCGUGUUAAAAAAAAAGCUUUGCUCAGUGAACCUAAAAAAUCGAGUUCAAAGAGCCAGGGGCGUUUAAAAUGGGCGU ..(((((((((((((.(((.....)))))))(((((.(....).))))).....))))))...((((..((((((.........).)))))..)))))))..((((((.....)))))) ( -33.50) >consensus AACUGGCUUUUGUUCUGGCUAAAUGUUGAACGGCACACGCAAGCGUGUUAAAAAAAAAGCUUUGCUCAGUGAACCUAAAAAAUCGAGUUCAAAGAGCCAGGGGCGUUUAAAAUGGGCGU .................(((.....(((((((.((((((....)))))...........(((.((((..((((((.........).)))))..)))).)))).)))))))....))).. (-27.07 = -27.30 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:55 2006