Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 3,009,888 – 3,010,005 |
Length | 117 |
Max. P | 0.598923 |
Location | 3,009,888 – 3,010,005 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.22 |
Mean single sequence MFE | -19.39 |
Consensus MFE | -13.76 |
Energy contribution | -15.08 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.56 |
Structure conservation index | 0.71 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3009888 117 - 23771897 AAAAACUUCGCUUAAAUUACUAAAGAAAAACUUAGUAGACCAUUUCAG---CAUGUCAGUUGAUCCACUAUCAAUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU .....((((((.....(((((((........)))))))...(((((((---..((((.((((((.....)))))).))))...............)))))))..)))))).......... ( -22.03) >DroSec_CAF1 44140 102 - 1 CAAAACUUCGCUUAAAUUACGAAAGAAAAACUUAGUAGACCAUUUCAG---CAUGUCA---------------AUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU .....((((((........(....).....(((((.............---..((((.---------------...))))...............)))))....)))))).......... ( -15.71) >DroSim_CAF1 44716 117 - 1 CAAAACUUCGCUUAAAUUACGAAAGAAAAACGUAGUAGACCAUUUCAG---CAUGUCAAUUGAUCCACUAUCAAUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU .....((((((....((((((.........)))))).....(((((((---..((((.((((((.....)))))).))))...............)))))))..)))))).......... ( -20.93) >DroYak_CAF1 44709 120 - 1 AAAAACUUUGCUAAAAUUACUAAAGAAAAACUUAGUAGACUAUUUCAGCAGCAUGUCAGUUGAACCACUAUCUAUCGAUAAUUCAACAAUCCCAUUUGAAAACUGCGAAGAAAACGAGUU .....((((((.....(((((((........)))))))....(((((((.....))..((((((....((((....)))).)))))).........)))))...)))))).......... ( -18.90) >consensus AAAAACUUCGCUUAAAUUACGAAAGAAAAACUUAGUAGACCAUUUCAG___CAUGUCAGUUGAUCCACUAUCAAUCGAUAAUUUCACAAUCCAAUCUGAGAUCUGCGAAGAAAACGAGUU .....((((((.....(((((((........)))))))....((((((.....((((.((((((.....)))))).))))...............))))))...)))))).......... (-13.76 = -15.08 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:52 2006