| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 3,003,554 – 3,003,669 |
| Length | 115 |
| Max. P | 0.572573 |
| Location | 3,003,554 – 3,003,669 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.71 |
| Mean single sequence MFE | -32.24 |
| Consensus MFE | -23.08 |
| Energy contribution | -23.04 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 3003554 115 + 23771897 CAGGCCUGUGCAUUGAAAUCCAAGAAGAGGAAACACGUGUCCGAUGCAGGACAAAAA--UACUGCAG---ACAUAAGGAUGCUUCAGCGUGUUCUUCAUAGUCCUACAUUCGUUCAAUGC .........((((((((......(((.(((((((((((((((......)))).....--....(((.---.(....)..)))....)))))))........))))...))).)))))))) ( -31.50) >DroSec_CAF1 37803 118 + 1 CAGGAUUGUGCAUUGAAAUCCAAGAAGAGGACACACGUGUCCGAUGCAGGACAAAAA--UACUGCAUAAUACAUAAGGAUGCUUCAGCAUGUUCUUCAUAGUCCUACAUUCUUUCAAUGC .........((((((((.....((((.(((((....((((...((((((........--..))))))...)))).((.((((....)))).)).......)))))...)))))))))))) ( -32.90) >DroSim_CAF1 38452 115 + 1 CAGGAUUGUGCAUUGAAAUCCAAGAAGAGGAAACACGUGUCCGAUGCAGGACAAAAA--UACUGCAG---ACAUAAGGAUGCUUCAGCAUGUUCUUCAUAGUCCUACAUUCGUUCAAUGC .(((((((((....(((((((.......(....)..(((((...(((((........--..))))))---))))..))))((....))...)))..)))))))))............... ( -29.70) >DroEre_CAF1 40485 116 + 1 CAGGAUUGUGCAUUGCAAUCCAAGAAGAGGAAACACGUGUCCGAUGCAGGACUAAAA-AUACUGCAG---AUAUAAGGAUGCUUCAGCAUGUUCUUCAUAGCUCUACAUUCGUUGAAUGC ..(((((((.....)))))))..((((((....)..((((((..(((((........-...))))).---......))))))..........))))).........(((((...))))). ( -31.20) >DroYak_CAF1 38403 117 + 1 CAGGAUUGUGCAGUGCAAUCCAAGAAGUGGAAACACGUGUCGGAUGCAGGACAAAAAUGUGAUGCAG---AUAUGUGGAUGCUUCAGCGUGUUCUUCAUAGUUCUACAUUCGUUGAAUGC ..(((((((.....)))))))..(((((((((.((((((((...((((..(((....)))..)))))---))))))).((((....))))...........)))))).)))......... ( -35.90) >consensus CAGGAUUGUGCAUUGAAAUCCAAGAAGAGGAAACACGUGUCCGAUGCAGGACAAAAA__UACUGCAG___ACAUAAGGAUGCUUCAGCAUGUUCUUCAUAGUCCUACAUUCGUUCAAUGC .(((((((((.......((((.......(....)..((((....(((((............)))))....))))..))))((....))........)))))))))............... (-23.08 = -23.04 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:50 2006