Locus 101

Sequence ID 3L_DroMel_CAF1
Location 355,577 – 355,675
Length 98
Max. P 0.872848
window140

overview

Window 0

Location 355,577 – 355,675
Length 98
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 75.45
Mean single sequence MFE -21.16
Consensus MFE -13.90
Energy contribution -13.77
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.51
Structure conservation index 0.66
SVM decision value 0.88
SVM RNA-class probability 0.872848
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 355577 98 + 23771897
CGCCGAAAAUAUUCCCUCUACCAUUUUUUGCGGCU-----GUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCGCAGCUUGUUGCUCCUCAUACUCCCA---GCACA
(((.((((((............)))))).)))(((-----(((((.(((..(((((....)))))))).)))))))).(((((.............))---))).. ( -23.52)
>DroPse_CAF1 12041 95 + 1
------AAAUAUUUUCUCUGCC-UUUUUUGUGGAU--UGUGUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCGCAGCUUGUUGCACCUCACCCCCUCG--AACACU
------................-...((((.((..--..((((((.(((..(((((....)))))))).))))))((.....)).........)).))--)).... ( -17.10)
>DroEre_CAF1 11097 76 + 1
----------------------AUUUUUUGCGGCU-----GUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCGCAGCUUGUUGCUCCUCAUACUCCCA---GCACA
----------------------.........((((-----(((((.(((..(((((....)))))))).)))))))))(((((.............))---))).. ( -19.62)
>DroYak_CAF1 11032 101 + 1
CCCCGAAAAUAUUCUCUCUGCCAUUUUUUGCGGCU-----GUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCGCAGCUUGUUGCUCCUCAUCCUCCCAGCAGCACA
...................((........))((((-----(((((.(((..(((((....)))))))).)))))))))(((((((............))))))).. ( -24.90)
>DroAna_CAF1 10734 83 + 1
-------------CC---CACUUCUUUUUGCGGCUGUGCUGUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCACAGCUUGUUGCUCCUCAUCCUCUCA---A----
-------------..---...........(((((...((((((((.(((..(((((....)))))))).))))))))..)))))..............---.---- ( -24.70)
>DroPer_CAF1 13121 95 + 1
------AAAUAUUUUCUCUGCC-UUUUUUGUGGAU--UGUGUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCGCAGCUUGUUGCACCUCACCCCCUCG--AACACU
------................-...((((.((..--..((((((.(((..(((((....)))))))).))))))((.....)).........)).))--)).... ( -17.10)
>consensus
______AAAUAUUCUCUCUGCCAUUUUUUGCGGCU_____GUGGGUCAAAUUGAAGUGCUUUUUAUUGCCCCGCAGCUUGUUGCUCCUCAUCCUCCCA___ACACA
............................((.((.......(((((.(((..(((((....)))))))).))))).((.....)).)).))................ (-13.90 = -13.77 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:24 2006