Locus 1009

Sequence ID 3L_DroMel_CAF1
Location 2,998,069 – 2,998,166
Length 97
Max. P 0.998691
window1560

overview

Window 0

Location 2,998,069 – 2,998,166
Length 97
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 71.60
Mean single sequence MFE -28.34
Consensus MFE -18.38
Energy contribution -19.66
Covariance contribution 1.28
Combinations/Pair 1.06
Mean z-score -2.53
Structure conservation index 0.65
SVM decision value 3.19
SVM RNA-class probability 0.998691
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2998069 97 - 23771897
GAA--------AU----AUAAUUUGAUUGAUA--UUUUUUUUUCAAGUGUACCUCUUUUAAGCUGGCAGUCGAAAUGGCUGCCAUGGACACGCCCCCUCUGGCGUGUUUAA
((.--------.(----(((.(((((..((..--....))..)))))))))..))........((((((((.....))))))))((((((((((......)))))))))). ( -31.80)
>DroSec_CAF1 32389 90 - 1
GAA--------AU----AUAAUUUGAUUGAUA--UUUU--UUUCGAGUGCGUCUCCUUU-----GGCAGUCGAAAUGGCUGCCAUGGACACUCCCCCUCUGGCGUGUUUAA
...--------..----...((((((..((..--..))--..))))))..........(-----(((((((.....))))))))(((((((.((......)).))))))). ( -25.00)
>DroEre_CAF1 34999 94 - 1
AAA--------AU----GGCAUUUGACUGGUA--UUU---UUUUGAGUGCACCUUUCUGAAUCUGGCAGUCGAAAUGGCUGCCAUGGACACGCCGCCUCUGGUGUGUUUAA
...--------((----(((((((((((((((--(((---....)))))).((...........)))))))))).....))))))((((((((((....)))))))))).. ( -32.00)
>DroYak_CAF1 32758 96 - 1
AGC--------AU----UACAUUUGACUAAUUAUUUU---UUUUGAGUGCACCUUUUUGAAGCUGGCAGUCUGAAUGGCUGCCAUGGACACGCCCCCUCUGGUGUGUUUAA
.((--------((----(.((................---...))))))).............((((((((.....))))))))((((((((((......)))))))))). ( -30.11)
>DroAna_CAF1 30297 104 - 1
GGAUAGACUAAAUUGUGGACAUCUGUGUCCUUU-UUU---UUCUUAGUGCACCUCUUCUAAACAGCCACACAAAAUGGCUGCCAUGGACACGC---CUCCGGUAUCUUUAA
(((((.((......))(((....(((((((...-...---...((((..........)))).((((((.......))))))....))))))).---.)))..))))).... ( -22.80)
>consensus
GAA________AU____AACAUUUGACUGAUA__UUU___UUUUGAGUGCACCUCUUUUAAGCUGGCAGUCGAAAUGGCUGCCAUGGACACGCCCCCUCUGGUGUGUUUAA
................................................................(((((((.....))))))).((((((((((......)))))))))). (-18.38 = -19.66 +   1.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:45 2006