Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,998,069 – 2,998,166 |
Length | 97 |
Max. P | 0.998691 |
Location | 2,998,069 – 2,998,166 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 71.60 |
Mean single sequence MFE | -28.34 |
Consensus MFE | -18.38 |
Energy contribution | -19.66 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.06 |
Mean z-score | -2.53 |
Structure conservation index | 0.65 |
SVM decision value | 3.19 |
SVM RNA-class probability | 0.998691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2998069 97 - 23771897 GAA--------AU----AUAAUUUGAUUGAUA--UUUUUUUUUCAAGUGUACCUCUUUUAAGCUGGCAGUCGAAAUGGCUGCCAUGGACACGCCCCCUCUGGCGUGUUUAA ((.--------.(----(((.(((((..((..--....))..)))))))))..))........((((((((.....))))))))((((((((((......)))))))))). ( -31.80) >DroSec_CAF1 32389 90 - 1 GAA--------AU----AUAAUUUGAUUGAUA--UUUU--UUUCGAGUGCGUCUCCUUU-----GGCAGUCGAAAUGGCUGCCAUGGACACUCCCCCUCUGGCGUGUUUAA ...--------..----...((((((..((..--..))--..))))))..........(-----(((((((.....))))))))(((((((.((......)).))))))). ( -25.00) >DroEre_CAF1 34999 94 - 1 AAA--------AU----GGCAUUUGACUGGUA--UUU---UUUUGAGUGCACCUUUCUGAAUCUGGCAGUCGAAAUGGCUGCCAUGGACACGCCGCCUCUGGUGUGUUUAA ...--------((----(((((((((((((((--(((---....)))))).((...........)))))))))).....))))))((((((((((....)))))))))).. ( -32.00) >DroYak_CAF1 32758 96 - 1 AGC--------AU----UACAUUUGACUAAUUAUUUU---UUUUGAGUGCACCUUUUUGAAGCUGGCAGUCUGAAUGGCUGCCAUGGACACGCCCCCUCUGGUGUGUUUAA .((--------((----(.((................---...))))))).............((((((((.....))))))))((((((((((......)))))))))). ( -30.11) >DroAna_CAF1 30297 104 - 1 GGAUAGACUAAAUUGUGGACAUCUGUGUCCUUU-UUU---UUCUUAGUGCACCUCUUCUAAACAGCCACACAAAAUGGCUGCCAUGGACACGC---CUCCGGUAUCUUUAA (((((.((......))(((....(((((((...-...---...((((..........)))).((((((.......))))))....))))))).---.)))..))))).... ( -22.80) >consensus GAA________AU____AACAUUUGACUGAUA__UUU___UUUUGAGUGCACCUCUUUUAAGCUGGCAGUCGAAAUGGCUGCCAUGGACACGCCCCCUCUGGUGUGUUUAA ................................................................(((((((.....))))))).((((((((((......)))))))))). (-18.38 = -19.66 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:45 2006