Locus 1007

Sequence ID 3L_DroMel_CAF1
Location 2,985,133 – 2,985,231
Length 98
Max. P 0.936236
window1557

overview

Window 7

Location 2,985,133 – 2,985,231
Length 98
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -39.08
Consensus MFE -19.43
Energy contribution -20.63
Covariance contribution 1.20
Combinations/Pair 1.19
Mean z-score -3.82
Structure conservation index 0.50
SVM decision value 1.25
SVM RNA-class probability 0.936236
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2985133 98 + 23771897
CAACAUUUCC-GC-GGCGCAUGCCCAGUAGCAACAU---AUCGACUAGCCGGCAACAUGCAACAUUGUUGCCAGGCG---GCAAGCCGGAAAACUUAAGCGGAAAA
.....(((((-((-(((...((((...((((.....---...).)))((((((((((........))))))).))))---))).)))(.....)....))))))). ( -37.30)
>DroSec_CAF1 19632 98 + 1
CAACAUUUCC-GC-GGCGCAUGCCCAGUAGCAACAU---AUCGACUAGCCGGCAACAUGCAACAUUGUUGUCAGGCG---GCAAGCCGGAAAACUUAAGCGGAAAA
.....(((((-((-(((...((((...((((.....---...).)))((((((((((........))))))).))))---))).)))(.....)....))))))). ( -34.60)
>DroSim_CAF1 19961 98 + 1
CAACAUUUCC-GC-GGCGCAUGCCCAGUAGCAACAU---AUCGACUAGCCGGCAACAUGCAACAUUGUUGCCAGGCG---GCAAGCCGGAAAACUUAAGCGGAAAA
.....(((((-((-(((...((((...((((.....---...).)))((((((((((........))))))).))))---))).)))(.....)....))))))). ( -37.30)
>DroEre_CAF1 21914 101 + 1
CAACAUUUCC-GC-GGCGCAUGCCCAGAAACAGUAU---UUCGACUAGCCGGCAACAUGCAACAUUGUUGCCAGGCGGUGGCAAGCCGGAAAACUUAAGCGGAAAA
.....(((((-((-(((...((((..((((.....)---))).(((.((((((((((........))))))).)))))))))).)))(.....)....))))))). ( -38.80)
>DroYak_CAF1 19603 98 + 1
CAACAUUUCC-GC-GGCGCAUGCCCAGAAACAAUAU---GUUGAUGUGCCGGCAACAUGCAACAUUGUUGCCAGGCG---GCAAGCCGGAAAACUUAAGUGGAAAA
.....(((((-((-(((...((((((..(((.....---)))..)).((((((((((........))))))).))))---))).)))(.....)....))))))). ( -37.60)
>DroPer_CAF1 20878 101 + 1
CAACACGGAGGGCGGGCGCAUGCUCGUUGGCAACAAUGUUGCGGCCACCCCCCGAGCGGCAACUUUGUUGCCCGAGA---GC-UGCCGGAAAAUCU-GGCGGAAUU
.....(((.(((.((.((((....(((((....))))).)))).)).))).))).(.((((((...)))))))....---.(-((((((.....))-))))).... ( -48.90)
>consensus
CAACAUUUCC_GC_GGCGCAUGCCCAGUAGCAACAU___AUCGACUAGCCGGCAACAUGCAACAUUGUUGCCAGGCG___GCAAGCCGGAAAACUUAAGCGGAAAA
.....(((((.((.(((((.(((......)))...............((((((((((........))))))).)))....))..)))(.....)....))))))). (-19.43 = -20.63 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:42 2006