Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,982,430 – 2,982,520 |
Length | 90 |
Max. P | 0.883606 |
Location | 2,982,430 – 2,982,520 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -25.01 |
Consensus MFE | -19.48 |
Energy contribution | -19.72 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.99 |
Structure conservation index | 0.78 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2982430 90 - 23771897 UAAGU-UUCUGCUGCUUGACAUUUACAUAAAAUGUAGAGUAGUUUCUGUUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCACUC ..(((-..((((((((((((((((((((...)))))))........))))))))))....(((((..((....))..))))))))..))). ( -26.00) >DroSec_CAF1 16547 90 - 1 UAAGU-UUCUGCUGCUUGACAUUUACAUAAACUGUAGAGUACUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCGCUC ..(((-..((((((((((...............((((((....)))))))))))))....(((((..((....))..))))))))..))). ( -24.16) >DroSim_CAF1 16868 90 - 1 UAAGU-UUCUGCUGCUUGACAUUUACAUAAACUGUAGAGUAGUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCGCUC ..(((-..((((...............((((((((..(((((...)))))..)))))))).((((..((....))..))))))))..))). ( -25.60) >DroEre_CAF1 18914 91 - 1 UAAAUAUUCUGGUGUCUGACAUUUACGUGAACUGUAGAGGAGUCUCUGCUAAGCGGUUUACCUUUGACCUCUUUGGAAAAGGCAGUCACUG ..........((((.(((.......(((.....((((((....))))))...))).....(((((..((.....)).)))))))).)))). ( -24.60) >DroYak_CAF1 16797 91 - 1 UAAAUAUUCUGGUGCUUGACAUUUACAUAAACUGUAGAGUAGUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGUAAAAGGCAGUCACUC ..........((((.(((.........((((((((..(((((...)))))..))))))))(((((.(((....))).)))))))).)))). ( -24.70) >consensus UAAGU_UUCUGCUGCUUGACAUUUACAUAAACUGUAGAGUAGUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCACUC ................((((.......((((((((..(((((...)))))..))))))))(((((..((....))..)))))..))))... (-19.48 = -19.72 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:40 2006