Locus 1005

Sequence ID 3L_DroMel_CAF1
Location 2,982,430 – 2,982,520
Length 90
Max. P 0.883606
window1555

overview

Window 5

Location 2,982,430 – 2,982,520
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -25.01
Consensus MFE -19.48
Energy contribution -19.72
Covariance contribution 0.24
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.78
SVM decision value 0.93
SVM RNA-class probability 0.883606
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2982430 90 - 23771897
UAAGU-UUCUGCUGCUUGACAUUUACAUAAAAUGUAGAGUAGUUUCUGUUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCACUC
..(((-..((((((((((((((((((((...)))))))........))))))))))....(((((..((....))..))))))))..))). ( -26.00)
>DroSec_CAF1 16547 90 - 1
UAAGU-UUCUGCUGCUUGACAUUUACAUAAACUGUAGAGUACUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCGCUC
..(((-..((((((((((...............((((((....)))))))))))))....(((((..((....))..))))))))..))). ( -24.16)
>DroSim_CAF1 16868 90 - 1
UAAGU-UUCUGCUGCUUGACAUUUACAUAAACUGUAGAGUAGUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCGCUC
..(((-..((((...............((((((((..(((((...)))))..)))))))).((((..((....))..))))))))..))). ( -25.60)
>DroEre_CAF1 18914 91 - 1
UAAAUAUUCUGGUGUCUGACAUUUACGUGAACUGUAGAGGAGUCUCUGCUAAGCGGUUUACCUUUGACCUCUUUGGAAAAGGCAGUCACUG
..........((((.(((.......(((.....((((((....))))))...))).....(((((..((.....)).)))))))).)))). ( -24.60)
>DroYak_CAF1 16797 91 - 1
UAAAUAUUCUGGUGCUUGACAUUUACAUAAACUGUAGAGUAGUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGUAAAAGGCAGUCACUC
..........((((.(((.........((((((((..(((((...)))))..))))))))(((((.(((....))).)))))))).)))). ( -24.70)
>consensus
UAAGU_UUCUGCUGCUUGACAUUUACAUAAACUGUAGAGUAGUCUCUGCUAAGCGGUUUACCUUUGACCUCCUGGGAAAAGGCAGUCACUC
................((((.......((((((((..(((((...)))))..))))))))(((((..((....))..)))))..))))... (-19.48 = -19.72 +   0.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:40 2006