Locus 1003

Sequence ID 3L_DroMel_CAF1
Location 2,981,041 – 2,981,134
Length 93
Max. P 0.966458
window1553

overview

Window 3

Location 2,981,041 – 2,981,134
Length 93
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.41
Mean single sequence MFE -33.82
Consensus MFE -26.76
Energy contribution -27.04
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -2.32
Structure conservation index 0.79
SVM decision value 1.60
SVM RNA-class probability 0.966458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2981041 93 - 23771897
AGCUACAAGUUUUGACGGAAAUCCAAGACGUCAGGAGGCG--CGCAGCGGGAAAGCCAGUUGUUC-AAAAGGGUUUCCGCUGGGCGAAAAGCCUCA
...........((((((...........))))))((((((--(.((((((((..(((..((....-.))..))))))))))).)).....))))). ( -35.00)
>DroSec_CAF1 15147 95 - 1
AGCUACAAGUUUUGACGGAAAUCCAAGACGUCAGGAGGCGCGCGCAGCGGGAAAGCCACUUGCUC-AAAAGGGUUUCCGCUGGGUGAAAAGCCUCA
...........((((((...........))))))(((((.(((.((((((((..(((.(((....-..)))))))))))))).)))....))))). ( -40.00)
>DroSim_CAF1 15475 95 - 1
AGCUACAAGUUUUGACGGAAAUCCAAGACGUCAGGAGGCGCGCGCAGCGGGAAAGCCACUUGCUC-AAAAGGGUUUCCGCUGGGUGAAAAGCCUCA
...........((((((...........))))))(((((.(((.((((((((..(((.(((....-..)))))))))))))).)))....))))). ( -40.00)
>DroEre_CAF1 17432 94 - 1
AGCUACAAGUUUUGACGGAAAUCCAAGACGUCGGGAGCCC--CGCAGCGGGAAAGUCACUAGCUCCAAAAGGGUUUCCGCUGGGAGAAAAGCCUCC
(((.....((....))((((((((..(....).(((((((--((...))))..........)))))....))))))))))).((((......)))) ( -28.20)
>DroYak_CAF1 15374 93 - 1
AGCCACAAGUUUUGACGGAAAUCCAAGACGUCAGGAGCCG--CGCAGCGGGUAAGCCACUAGCUC-AAAAGGGUUUCCGCUGGGAGUAAAGCCUCA
........((((((.(((...(((.........))).)))--(.(((((((..((((.((.....-...))))))))))))).)..)))))).... ( -25.90)
>consensus
AGCUACAAGUUUUGACGGAAAUCCAAGACGUCAGGAGGCG__CGCAGCGGGAAAGCCACUUGCUC_AAAAGGGUUUCCGCUGGGAGAAAAGCCUCA
...........((((((...........))))))(((((...(.(((((((((..((.............)).))))))))).)......))))). (-26.76 = -27.04 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:38 2006