Locus 1001

Sequence ID 3L_DroMel_CAF1
Location 2,980,174 – 2,980,265
Length 91
Max. P 0.802244
window1551

overview

Window 1

Location 2,980,174 – 2,980,265
Length 91
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 84.82
Mean single sequence MFE -12.18
Consensus MFE -8.14
Energy contribution -9.02
Covariance contribution 0.88
Combinations/Pair 1.12
Mean z-score -2.21
Structure conservation index 0.67
SVM decision value 0.62
SVM RNA-class probability 0.802244
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2980174 91 - 23771897
UAACAAAUUCCAUUUAACCCCCGCCA-UGAUUUUUCUUCUUUU-CGCCAGGCUUC-AAAACAUGGAAACAUGUUUAUUUUAGAUCAUUUCCUUC
...........((((((.....(((.-((..............-...)))))...-.(((((((....)))))))...)))))).......... ( -13.33)
>DroSec_CAF1 14311 91 - 1
UAACAAAUUCCAUUUAACCCCCGCCA-UGAUUUUCCUUCUUUU-CGUCAGGCUUC-AAAACAUGGAAACAUGUUUAUUUUAGAUCAUUUCCUUC
...........((((((.....(((.-((((............-.)))))))...-.(((((((....)))))))...)))))).......... ( -16.02)
>DroSim_CAF1 14635 91 - 1
UAACAAAUUCCAUUUAACCCCCGCCA-UGAUUUUCCUUCUUUU-CGCCAGGCUCC-AAAACAUGGAAACAUGUUUAUUUUAGAUCAUUUCCUUC
...........((((((.....(((.-((..............-...)))))...-.(((((((....)))))))...)))))).......... ( -13.33)
>DroYak_CAF1 14521 93 - 1
UAACAAAUUCCAUUUAACCCACGCCA-UGAUUUUCCUUCUUUUGCGCCAGGCUCCAAAAACAUGGAAACAUGUUUAUUUUAGAUAAUUUCCUUC
...........((((((((..(((..-.((.......))....)))...))......(((((((....)))))))...)))))).......... ( -14.20)
>DroAna_CAF1 13026 83 - 1
UAACAAAUUCCAUUUAGUCCCCUUCCUCCAUUUUUUUUG-----AACUCGGCAC------AACGGAAACAUGUUUAUUUUAGAUCAUUUCAUUC
.((((..((((.....(((...(((.............)-----))...)))..------...))))...)))).................... (  -4.02)
>consensus
UAACAAAUUCCAUUUAACCCCCGCCA_UGAUUUUCCUUCUUUU_CGCCAGGCUCC_AAAACAUGGAAACAUGUUUAUUUUAGAUCAUUUCCUUC
...........((((((.....(((........................))).....(((((((....)))))))...)))))).......... ( -8.14 =  -9.02 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:36 2006