Locus 1000

Sequence ID 3L_DroMel_CAF1
Location 2,977,422 – 2,977,520
Length 98
Max. P 0.902341
window1550

overview

Window 0

Location 2,977,422 – 2,977,520
Length 98
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -26.66
Consensus MFE -18.50
Energy contribution -19.45
Covariance contribution 0.95
Combinations/Pair 1.04
Mean z-score -2.51
Structure conservation index 0.69
SVM decision value 1.02
SVM RNA-class probability 0.902341
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2977422 98 + 23771897
AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCAGCACGCUUUUCCUG-CA-GUGGAAAGGAAACUGUAACAGAAAAACC
((((((((......)))))))).((((((..(((((......(((((((.....))..((.......)-).-)))))...)))))...))))))...... ( -29.50)
>DroSec_CAF1 11632 98 + 1
AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCACCACGAUUUUCCUC-CA-GUGGAAAGGAAACUGAAACAGAAAAACC
((((((((......)))))))).....((((((((((.((..(((....((((((...((......))-..-)))))).))).))))))))))))..... ( -28.00)
>DroSim_CAF1 11930 98 + 1
AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCACCACGCUUUUUCUC-CA-GUGGAAAGGAAACUGAAACAGAAAAACC
((((((((......)))))))).....((((((((((.((..(((....((((((.............-..-)))))).))).))))))))))))..... ( -27.06)
>DroEre_CAF1 13878 99 + 1
AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCUUAUCCACCCUGCUCUUUCCACGCUUUUCCCC-CAAUGCGAAAGGGAACUGAAACAGAAAAACC
((((((((......)))))))).(((((((((((((((........((.......))(((........-....)))..))))))).))))))))...... ( -22.30)
>DroYak_CAF1 11864 87 + 1
AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCGUGUCC-----------UCCACGCUUUUCCUC-CA-UCGGAAAGGAAACUGAAACAGAAAAACC
((((((((......)))))))).(((((((((((((((((..-----------...))))((((((..-..-..))))))))))).))))))))...... ( -28.20)
>DroAna_CAF1 10740 89 + 1
AAGUGGCGCCAUUUUGCCAUUUGUCUGCUGUGUCUCCC-UCCUCCUC--CUCCUCC----UCUGACUCUUG-GCGGAAAAGGA---GAAACAGAAAAACC
((((((((......)))))))).....((((.(((((.-...(((.(--(......----..........)-).)))...)))---)).))))....... ( -24.89)
>consensus
AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCACCACGCUUUUCCUC_CA_GUGGAAAGGAAACUGAAACAGAAAAACC
((((((((......)))))))).(((((((((((((...(((................................)))...))))).))))))))...... (-18.50 = -19.45 +   0.95) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:35 2006