Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,977,422 – 2,977,520 |
Length | 98 |
Max. P | 0.902341 |
Location | 2,977,422 – 2,977,520 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.26 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -18.50 |
Energy contribution | -19.45 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.04 |
Mean z-score | -2.51 |
Structure conservation index | 0.69 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2977422 98 + 23771897 AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCAGCACGCUUUUCCUG-CA-GUGGAAAGGAAACUGUAACAGAAAAACC ((((((((......)))))))).((((((..(((((......(((((((.....))..((.......)-).-)))))...)))))...))))))...... ( -29.50) >DroSec_CAF1 11632 98 + 1 AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCACCACGAUUUUCCUC-CA-GUGGAAAGGAAACUGAAACAGAAAAACC ((((((((......)))))))).....((((((((((.((..(((....((((((...((......))-..-)))))).))).))))))))))))..... ( -28.00) >DroSim_CAF1 11930 98 + 1 AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCACCACGCUUUUUCUC-CA-GUGGAAAGGAAACUGAAACAGAAAAACC ((((((((......)))))))).....((((((((((.((..(((....((((((.............-..-)))))).))).))))))))))))..... ( -27.06) >DroEre_CAF1 13878 99 + 1 AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCUUAUCCACCCUGCUCUUUCCACGCUUUUCCCC-CAAUGCGAAAGGGAACUGAAACAGAAAAACC ((((((((......)))))))).(((((((((((((((........((.......))(((........-....)))..))))))).))))))))...... ( -22.30) >DroYak_CAF1 11864 87 + 1 AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCGUGUCC-----------UCCACGCUUUUCCUC-CA-UCGGAAAGGAAACUGAAACAGAAAAACC ((((((((......)))))))).(((((((((((((((((..-----------...))))((((((..-..-..))))))))))).))))))))...... ( -28.20) >DroAna_CAF1 10740 89 + 1 AAGUGGCGCCAUUUUGCCAUUUGUCUGCUGUGUCUCCC-UCCUCCUC--CUCCUCC----UCUGACUCUUG-GCGGAAAAGGA---GAAACAGAAAAACC ((((((((......)))))))).....((((.(((((.-...(((.(--(......----..........)-).)))...)))---)).))))....... ( -24.89) >consensus AAGUGGCGCCAUUUUGCCAUUUGUCUGUUUUGUUUCAUGUCCUCCGCGCUUCCACCACGCUUUUCCUC_CA_GUGGAAAGGAAACUGAAACAGAAAAACC ((((((((......)))))))).(((((((((((((...(((................................)))...))))).))))))))...... (-18.50 = -19.45 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:35 2006