Locus 100

Sequence ID 3L_DroMel_CAF1
Location 354,313 – 354,416
Length 103
Max. P 0.976914
window139

overview

Window 9

Location 354,313 – 354,416
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.52
Mean single sequence MFE -19.50
Consensus MFE -16.02
Energy contribution -15.66
Covariance contribution -0.36
Combinations/Pair 1.11
Mean z-score -2.11
Structure conservation index 0.82
SVM decision value 1.78
SVM RNA-class probability 0.976914
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 354313 103 + 23771897
UCUUCAUCAGCAGACCCUAUCAUUUCUUGGCAUGUCAUUGAAAUCGUUACAUCCAUUCGGAUCCCACCCUGCACCAGGGAUUCAUUCCCCCACCUGGUCCUUC
.........((((........(((((.(((....)))..)))))......((((....))))......))))((((((..............))))))..... ( -20.04)
>DroSec_CAF1 8466 103 + 1
AUUUCAUCAGCAAACCCUAUCAUUUCUUGGCAUGUCAUUGAAAUCGUUACAUCCAUUCGGAUCCCACCCCGCACCAGGGAUUCAUUCCCCCACCUGGUCCUUC
.....(((((.................(((.((((...((....))..)))))))...(((((((...........)))))))..........)))))..... ( -17.50)
>DroSim_CAF1 9097 103 + 1
UCUUCAUCAGCAGACCCUAUCAUUUCUUGGCAUGUCAUUGAAAUCGUUACAUCCAUUCGGAUCCCACCCCGCACCAGGGAUUCAUUCCCCCACCUGGUCCUUC
............((((...........(((.((((...((....))..)))))))...(((((((...........)))))))............)))).... ( -19.50)
>DroEre_CAF1 9811 103 + 1
UGCUCAUCAGCAGGCCCUAUCAUUUUUUAGUAUGCCAUUGCAAUCGUCACAUCCAUGCGGAUCCCACCCCGCACCAGGGAUUCAUUCCCCCACCUGGUCCUUC
((((....))))(((.(((........)))...)))....................((((........))))((((((..............))))))..... ( -22.34)
>DroYak_CAF1 9691 103 + 1
CCUUCAUCAGCAGACCCUAUCAAUUCUUAGUAUGUCAUUGCAAUCGUCACAUCCAUACGGAUCCCACCCCGCACCAGGGAUUCAUUACCCCACCUGGUCCUUC
............((((.............(((((....(((....).))....)))))(((((((...........)))))))............)))).... ( -18.10)
>consensus
UCUUCAUCAGCAGACCCUAUCAUUUCUUGGCAUGUCAUUGAAAUCGUUACAUCCAUUCGGAUCCCACCCCGCACCAGGGAUUCAUUCCCCCACCUGGUCCUUC
.........((.(((.(((........)))...)))..............((((....))))........))((((((..............))))))..... (-16.02 = -15.66 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:23 2006