Locus 10

Sequence ID 3L_DroMel_CAF1
Location 38,281 – 38,381
Length 100
Max. P 0.566193
window13

overview

Window 3

Location 38,281 – 38,381
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 84.45
Mean single sequence MFE -25.53
Consensus MFE -16.40
Energy contribution -17.40
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.64
SVM decision value 0.06
SVM RNA-class probability 0.566193
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 38281 100 + 23771897
UUUGCACGCUGUUGCCCAACUGAUUUGUUGCCAACGCUUCCAUUUUCCACUUGGCUUAGGUUAGUUUGCUUCGACGGCCAUCAAGUGGAAUUGGUCUCUC
.......((.((((..((((......)))).))))))..(((..((((((((((....((((.(((......))))))).)))))))))).)))...... ( -27.00)
>DroSec_CAF1 27820 83 + 1
UUUGCACGCUGUUGCCGAACUGAUUUCUUGCCAACGCUUCGAUUUUCGACUUGGCUUAGGUUAGUUUGCCUCGACG-----------------GUCUCUC
.......(((((((.(((((((((((...(((((....(((.....))).)))))..)))))))))))...)))))-----------------))..... ( -24.80)
>DroSim_CAF1 29423 83 + 1
UUUGCACGCUGUUGCCGAACUGAUUUCUUGCCAACGCUUCGAUUUUCGACUUGGCUUAGGUUAGUUUGCCUCGACG-----------------GUCUCUC
.......(((((((.(((((((((((...(((((....(((.....))).)))))..)))))))))))...)))))-----------------))..... ( -24.80)
>consensus
UUUGCACGCUGUUGCCGAACUGAUUUCUUGCCAACGCUUCGAUUUUCGACUUGGCUUAGGUUAGUUUGCCUCGACG_________________GUCUCUC
..........((((.(((((((((((...(((((....(((.....))).)))))..)))))))))))...))))......................... (-16.40 = -17.40 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:49 2006