| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,103 – 20,193 |
| Length | 90 |
| Max. P | 0.641627 |
| Location | 20,103 – 20,193 |
|---|---|
| Length | 90 |
| pre Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 65.03 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -8.48 |
| Energy contribution | -10.04 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20103 90 - 23771897 CA-ACAAUGCUGUGAAGC---AUUUAUGUGCUAUGCAUUUGCAUAAAAGUAAUUUUGC-----CAAUGCGAAAAUUUAGACGACAAAUGACUCGCAUUC------- ..-.......((((((((---((....))))).((((((.(((..(((....))))))-----.)))))).....................)))))...------- ( -18.00) >DroGri_CAF1 25210 99 - 1 ----AAGUUUUAUAGAGCAAAAUUUAUUUGCUUUGCAUUUGCAUAAAAGUAAUUUAGCUUUAUGAGUGCGAGCAG---CACAGCAAAUGACCCGCUUGCUCUCUCC ----.........(((((((...(((((((((.(((.(((((((.(((((......)))))....)))))))..)---)).))))))))).....))))))).... ( -28.80) >DroWil_CAF1 44484 95 - 1 CAGAAAAUUUUAUAGAGCAAAAUUUAUGUGCUCAGCAUUUGCAUAAAACUAAUUUUGCA----CAAAGCGAAAACUAAGUCGGCAAAUGCUUCCACUUC------- ..............(((((.........)))))(((((((((..........((((((.----....)))))).........)))))))))........------- ( -22.21) >consensus CA_AAAAUUUUAUAGAGCAAAAUUUAUGUGCUAUGCAUUUGCAUAAAAGUAAUUUUGC_____CAAUGCGAAAACU_AGACGGCAAAUGACUCGCAUUC_______ ............(((((((.........)))))))(((((((..........((((((.........)))))).........)))))))................. ( -8.48 = -10.04 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:37 2006