| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,196,826 – 4,196,919 |
| Length | 93 |
| Max. P | 0.910376 |
| Location | 4,196,826 – 4,196,919 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 87.24 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -21.41 |
| Energy contribution | -21.75 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4196826 93 + 20766785 -----CAUUUGCAUUUUUACUGCAAAUUCGAAAUCGAUUGUGAUGUUCCCUCAACGGACUUGGGUUACAUCUCUGUUUCGAAUAAGAUGCGAACAAUG------ -----..((((((((((........(((((((((.((....(((((..((.(((.....)))))..))))))).))))))))))))))))))).....------ ( -25.40) >DroSec_CAF1 8587 93 + 1 -----CAUUUGCAUUUUUACUGCAAAUUCGAAAUCGAUUGUGAUGUUCCCUCAACGGACUUGGGUUACAUCUCUGUUUCCAAUGAGAUGCGAACAAUG------ -----..((((((((((....((((..(((....)))))))(((((..((.(((.....)))))..)))))............)))))))))).....------ ( -21.70) >DroSim_CAF1 18060 93 + 1 -----CAUUUGCAUUUUUACUGCAAAUUCGAAAUCGAUUGUGAUGUUCCCUCAACGGACUUGGGUUACAUCUCUGUUUCGAAUGAGAUGCGAACAAUG------ -----..((((((((((........(((((((((.((....(((((..((.(((.....)))))..))))))).))))))))))))))))))).....------ ( -25.80) >DroEre_CAF1 10748 98 + 1 CAUGGCAUUUGCAUUUUUACUGCAAAUUCGAAAUCGAUUGUGAUGUUCCCUCAGCGGACUUGGGUUACAUCUCUGUUUCGAAUGAGAUGCGAACAAUG------ ....(((((((((.......)))..(((((((((.((....(((((..(((.((....)).)))..))))))).))))))))).))))))........------ ( -27.00) >DroYak_CAF1 9589 93 + 1 -----CAUUUGCAUUUUUACUGCAAAUUCGAAAUCGAUUGUGAUGUUCCCUCAACGGACUUGGGUUACAUCUCUGUUUCGAAUGAGAUGCGAACAAUG------ -----..((((((((((........(((((((((.((....(((((..((.(((.....)))))..))))))).))))))))))))))))))).....------ ( -25.80) >DroAna_CAF1 7830 102 + 1 CAA-ACAUUUGCAUUUUUACUGCAAACUUCAAAUCGAUUUUAUUGUUUUCUCAACAGACUUGGGUUACAUAUCAAUUACGAG-AGGAUGCUUUUAAUGUCUCUU ...-(((((.((((((((.........................(((...(((((.....)))))..)))..((......)))-)))))))....)))))..... ( -13.10) >consensus _____CAUUUGCAUUUUUACUGCAAAUUCGAAAUCGAUUGUGAUGUUCCCUCAACGGACUUGGGUUACAUCUCUGUUUCGAAUGAGAUGCGAACAAUG______ .......((((((((((........(((((((((.((....(((((..((.(((.....)))))..))))))).)))))))))))))))))))........... (-21.41 = -21.75 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:43 2006