Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,196,611 – 4,196,709 |
Length | 98 |
Max. P | 0.546149 |
Location | 4,196,611 – 4,196,709 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 76.30 |
Mean single sequence MFE | -28.86 |
Consensus MFE | -11.07 |
Energy contribution | -11.41 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.39 |
Mean z-score | -2.15 |
Structure conservation index | 0.38 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4196611 98 - 20766785 --CGCCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC-----CAGUUGCA-UUUCGGUUUCAGAUACGCAUAAAUA--------UGUA----UCGGGUGCUCUUAC --(((((.......((((((.........((((((((....))))))))-----.)))))).-...........((((((........--------))))----)))))))....... ( -28.20) >DroSec_CAF1 8373 97 - 1 --CACCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC------AGUUGCA-UUUCAGUUGCAAAUACGCAUAAAUA--------UGUA----UGGGAUGCUGUUAU --..((((......((((((...((..((((((((((....))))))))------))..)).-....))))))......((((....)--------))).----)))).......... ( -28.30) >DroSim_CAF1 17846 97 - 1 --CACCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC------AGUUGCG-UUUCAGUUGCAGAUACGCAUAAAUA--------UGUA----UCGGAUGCUGUUAU --............((((((((.((..((((((((((....))))))))------))..)).-...........((((((........--------))))----))))).)))))... ( -30.30) >DroEre_CAF1 10514 103 - 1 --CACCGAAAUGACACAGCUCCAGUUCUUGUA------GAUGCAUCUGC------AGUUGCA-UUUUAGUUGCAGAUUCGCAUAAAUACAUACAUAUGUAUGUGUCGGGUGCUGUUAC --............(((((.((..........------.((((((((((------(..((..-...))..)))))))..))))..((((((((....))))))))..)).)))))... ( -30.60) >DroYak_CAF1 9375 99 - 1 --CACCGAAAUGACACAGCUCCAGUUCUUGUAGAUAUAGAUGCAUCUGC------AGUUGCA-UUUCAGUUGCAGAUUCGCAUAAAUA--------UGUA--UUUCGGGUGCUGUUUC --.........((.(((((.((.......(((.((((..((((((((((------(..((..-...))..)))))))..))))..)))--------).))--)....)).))))).)) ( -29.60) >DroAna_CAF1 7614 104 - 1 GACACGCAAAUGAUGCAGUUCCA---CUUGUGGAUACAGAUACAGAUACAGAUACGGUUACACUUUCGGAUACAGAUCUGCAUCAA-G--------UGCG--UUCCGCUUGCAGUUUC ((.(((((..((((((.((((((---....)))).))......((((.......(((........))).......)))))))))).-.--------))))--)))............. ( -26.14) >consensus __CACCCAAAUGACGCAGCUCCAGUUCUUGUAGAUGUAGAUGCAUCUGC______AGUUGCA_UUUCAGUUGCAGAUACGCAUAAAUA________UGUA____UCGGGUGCUGUUAC ..............((((((((.....((((((.......((((.((........)).)))).......))))))....(((..............))).......))).)))))... (-11.07 = -11.41 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:42 2006