Locus 997

Sequence ID 2R_DroMel_CAF1
Location 4,187,896 – 4,188,016
Length 120
Max. P 0.936723
window1767

overview

Window 7

Location 4,187,896 – 4,188,016
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.01
Mean single sequence MFE -40.20
Consensus MFE -38.91
Energy contribution -38.37
Covariance contribution -0.55
Combinations/Pair 1.11
Mean z-score -1.96
Structure conservation index 0.97
SVM decision value 1.26
SVM RNA-class probability 0.936723
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4187896 120 - 20766785
UUCUCGGUGCUCAGAAAACGCUUUUCAAACGGCCGAUAACCGGUGAAGAGCUCUGAAGGUGUUCGGCUUUUUAUCAGCUACAGAUUGCUUAGCACUAACUAACGCGCCGAAGCCCGGACC
...((((((((((((....((((((((..(((.......))).))))))))))))).((((((.(((.....(((.......))).))).)))))).......))))))).......... ( -38.80)
>DroSim_CAF1 9169 116 - 1
UUCUCGGUGCUCAGAAAACGCUUUUCAAACGGGCGAUAACCGGUGGAGAGCUCUGAAGGUGUUCGGCUUUUUAUCAGCUAGAGAUUGCUUAGCACU----AAAGCGCCGAAGUCCGAAUC
...((((((((((((....((((((((..(((.......))).))))))))))))).((((((.(((((((((.....))))))..))).))))))----...))))))).......... ( -40.20)
>DroEre_CAF1 1799 116 - 1
UUCUCGGCGCUCAGAAAACGCUUUUCAAACGGGCGAUAACCGGUGGAGAGCUCUGAAGGUGCUCGGUUUUUUAUCAGCUAGAGAUUGCUUAGCCCU----AAAGCGCCGAAGUCCGAGUC
...((((((((((((....((((((((..(((.......))).)))))))))))))(((.(((.(((((((((.....))))))..))).))))))----...))))))).......... ( -41.60)
>consensus
UUCUCGGUGCUCAGAAAACGCUUUUCAAACGGGCGAUAACCGGUGGAGAGCUCUGAAGGUGUUCGGCUUUUUAUCAGCUAGAGAUUGCUUAGCACU____AAAGCGCCGAAGUCCGAAUC
...((((((((((((....((((((((..(((.......))).))))))))))))).((((((.(((..(((.........)))..))).)))))).......))))))).......... (-38.91 = -38.37 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:41 2006