Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,173,689 – 4,173,806 |
Length | 117 |
Max. P | 0.515311 |
Location | 4,173,689 – 4,173,806 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.88 |
Mean single sequence MFE | -46.55 |
Consensus MFE | -31.18 |
Energy contribution | -30.43 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.24 |
Mean z-score | -1.30 |
Structure conservation index | 0.67 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4173689 117 + 20766785 CUCUAUUGGUUUUUCCGGCCAUGAUUUCGUUGGAUCUACGGAGACGUACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUUCCGGUGUGGAAGGAACAGCCGAAGGUGGCACCA---C ......((((...((((.((..(....)(((((...((((....))))...))))).)).))))(((((((.((((...((((((.....))))))..)))).)))))))..))))---. ( -46.80) >DroPse_CAF1 1039 110 + 1 CUCUGCUGGUCUUCCCGGCCAUGAUCUCCUUGGAUCUGCGGCGGCGCACAGCCGGACGGGCGGACAUUUUCUGCUGCUGCUUUCCCGUGUGGAAGGAGCAGUCCAAAGUG---------- .((((((.((((.....(((..(((((....)))))...)))(((.....))))))).))))))((((((..((((((.((((((.....))))))))))))..))))))---------- ( -48.20) >DroEre_CAF1 1175 117 + 1 CUCUGCUGGUGUUUCCGGCCAUGAUUUCGCUGGAUCUGCGAAGGCGCACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUCCCGGUGUGGAAGGAACAGCCGAAGGUGGCUCCU---C (((((((((((..((((((.........))))))..((((....)))).))))))))))).((((((((((.((((.(.(((((......))))).).)))).)))))))..))).---. ( -53.10) >DroYak_CAF1 1060 117 + 1 CUCUGUUGGUUUUUCCGGCCAUGAUUUCUCUGGAUCUGCGAAGGCGCACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUCCCGGUGUGGAAGGAACAACCAAAAGUGGCUCCU---C (.((.((((((.((((..((..((((......)))).((....))((((((..(((((((((((.....)))))).)))))...))))))))..)))).)))))).)).)......---. ( -42.50) >DroAna_CAF1 1209 120 + 1 CAAUCCUGGUUUUCCCGGCUCUCAUUUCCCUGGACCUGCGCCGGCGCACCGCUGGUCGGGCUGACAUCUUCUGCUGCUGUUUCCCGAUCUGGAAGGAGCCGCCCAAGGUGGCUGCCCAGC ...(((.(((....(((((...((..((....))..)).)))))...)))...(((((((..((((.(.......).)))).))))))).))).(((((((((...))))))).)).... ( -43.20) >DroPer_CAF1 1039 110 + 1 CUCUGCUGGUCUUCCCGGCCAUGAUCUCCUUGGAUCUGCGGCGGCGCACAGCCGGACGGGCGGACAUUUUCUGCUGCUGUUUUCCCGUGUGGAAGGAGCAGUCCAAAGUG---------- .((((((.((((.....(((..(((((....)))))...)))(((.....))))))).))))))((((((..((((((.((((((.....))))))))))))..))))))---------- ( -45.50) >consensus CUCUGCUGGUUUUCCCGGCCAUGAUUUCCCUGGAUCUGCGGAGGCGCACCGCCGGCAGGGCGGACAUCUUCUGCUGCUGUUUCCCGGUGUGGAAGGAACAGCCCAAAGUGGCUCC____C ........((((..(((((...((((......))))((((....))))..)))))..))))...((((((..((((.(.(((((......))))).).))))..)))))).......... (-31.18 = -30.43 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006