Locus 992

Sequence ID 2R_DroMel_CAF1
Location 4,162,951 – 4,163,069
Length 118
Max. P 0.888576
window1760

overview

Window 0

Location 4,162,951 – 4,163,069
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 74.57
Mean single sequence MFE -24.36
Consensus MFE -7.68
Energy contribution -7.72
Covariance contribution 0.04
Combinations/Pair 1.17
Mean z-score -1.99
Structure conservation index 0.32
SVM decision value 0.95
SVM RNA-class probability 0.888576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4162951 118 + 20766785
UGGAGGAUUUACCUCCAAAUAUAGACAUUUGUUUAUGAAACUAUUCGCCGUAAAAGUAGACGGAAUAACCCUUUCGCUGCAGUCUAAAACUACAACAAAUUGGAUGUUUUACCAAUCU
((((((.....))))))....(((((.....((((((...........)))))).((((.(((((......))))))))).)))))............(((((........))))).. ( -27.10)
>DroSec_CAF1 29231 102 + 1
UGGAGGAUUUACCUCCAAAUAUAGACAUUUGUUUAUGAAACUGUUCGCCGUAGAAGUA----------------CGCUGUAUUGCAAAACUAAAACAAAUUGGAUGUUUUACCAAUCU
((((((.....))))))..(((((((....))))))).........((.(((..((..----------------..)).))).)).....(((((((.......)))))))....... ( -19.50)
>DroSim_CAF1 39496 117 + 1
UGGAGGAUUUACCUCCAAAUAUAGACAUUUGUUUAUGAAACUGUUCGCCGUAAAAGUAGAA-GAAUACCCCUUUUGCUGCAUUCCAAAACUAAAACAAAUUGGAGGUUCUACCAAUCU
(((.(((...((((((((.(((((((....))))))).........((.(((((((..(..-.....)..))))))).))...................))))))))))).))).... ( -30.00)
>DroEre_CAF1 27723 110 + 1
UGGAGGAUUUACCUACAGAUAUGGACAUUUU--UU-----CCAUUCGCCGUAAAAGCGGAU-GAAUACCCACUUCGCUACAGUCCAAAACUAGAAUAAACUUGAAGUUUUACCAAUCU
(((.(((((....(((.(..(((((......--.)-----))))...).)))..(((((((-(......)).))))))..)))))((((((.((......))..)))))).))).... ( -21.20)
>DroYak_CAF1 31578 97 + 1
UGGAGGAUUUACCUCCGAAUAUAGACAUUUU--UAUGAAACUAUUCGCCGUAUAAGUAGAU-GAAUACUCUUUUCGG------------------UGAAUUUGAUGUUUUACCAAUCU
.(((((.....)))))...............--..((((((.((((((((....((((...-...)))).....)))------------------))))).....))))))....... ( -24.00)
>consensus
UGGAGGAUUUACCUCCAAAUAUAGACAUUUGUUUAUGAAACUAUUCGCCGUAAAAGUAGAU_GAAUACCCCUUUCGCUGCAGUCCAAAACUAAAACAAAUUGGAUGUUUUACCAAUCU
((((((.....))))))..................................................................................................... ( -7.68 =  -7.72 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:34 2006