Locus 991

Sequence ID 2R_DroMel_CAF1
Location 4,161,268 – 4,161,366
Length 98
Max. P 0.933089
window1759

overview

Window 9

Location 4,161,268 – 4,161,366
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 87.12
Mean single sequence MFE -31.24
Consensus MFE -25.78
Energy contribution -25.86
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -1.97
Structure conservation index 0.83
SVM decision value 1.23
SVM RNA-class probability 0.933089
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4161268 98 - 20766785
UUGCCCAGCGGGCGUCUGUGUGCACUGUUUUGCGCCUGUGUGCGUGGGCGACACUCAACACACA-ACACAGACGCUCUCCCUACUCUCACUCGCUCUCU
.........((((((((((((....((((.((((((..(....)..)))).))...))))....-))))))))))))...................... ( -34.20)
>DroSec_CAF1 27554 98 - 1
UCGACCAGCGGGCGUCUGUGUGCACUGUUUUGCGCCUGUGUGCGUGGGCGACACUCCACACACA-ACACAGACGCUCUCCCCACUCUCUCUCGCUCUCU
.........(((((((((((((((......))).....((((.(((((......))))).))))-))))))))))))...................... ( -35.30)
>DroSim_CAF1 37837 98 - 1
UCGACCAGCGGGCGUCUGUGUGCACUGUUUUGCGCCUGUGUGCGUGGGCGACACUCAACACACA-AAACAGACGCUCUCCCCACUCUCUCUCGCUCUCU
.........(((((((((((((((......))))).((((((..((((.....)))).))))))-..))))))))))...................... ( -32.70)
>DroEre_CAF1 26040 98 - 1
UCGCUCUUCAGGCGUCUGUGUGCACCGUUUUGCGCCUGUGUGCGUGGGCGACACUA-ACACUCACUCAUAGACGCUCUCCCCACUCUCUCUCGCUCUCU
..........((((((((((......(((.((((((..(....)..)))).))..)-)).......))))))))))....................... ( -26.22)
>DroYak_CAF1 29910 98 - 1
CCGCUCUUAGGGCGUCUGUGUGCACUGUUUUGCGCCUGUGUGCACUGGAGACACUC-GCACUUACACACACACGCUCUCCGAACUCUCUCUUGCUCUCU
....((..(((((((.((((((((......)))....(((((...((....))..)-))))....))))).)))))))..))................. ( -27.80)
>consensus
UCGCCCAGCGGGCGUCUGUGUGCACUGUUUUGCGCCUGUGUGCGUGGGCGACACUC_ACACACA_ACACAGACGCUCUCCCCACUCUCUCUCGCUCUCU
.........(((((((((((((((......)))))..((((.....(....).....))))......))))))))))...................... (-25.78 = -25.86 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:33 2006