Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,159,050 – 4,159,165 |
Length | 115 |
Max. P | 0.817691 |
Location | 4,159,050 – 4,159,165 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 74.17 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -13.82 |
Energy contribution | -14.83 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.23 |
Mean z-score | -1.93 |
Structure conservation index | 0.56 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4159050 115 - 20766785 GCAU-UGCCUACUCGGAGGCGCAUUACUCCCCCAUAAAUAAUGAUAUUCUUAAAUGGUAAUGAAUUCUGUUUCAAUCUAUAUUUCUCAAUUCAGGAUCGUUUAAAGCGAUAAACCA ..((-(((......((((........))))...................(((((((((..((((((..(...............)..))))))..))))))))).)))))...... ( -20.16) >DroSec_CAF1 25195 115 - 1 GCGC-UGCCUACUCGGAGGCGCAUUACUCCUCCAUAUAUAAAAAUAUUCUUAAAUGAUGGUGGAUUCUGUUCCAACCUAUAUUUCUCAAUUCGAGAUCGUUUAAGGCAAUAAACUU ....-(((((....(((((.(.....).))))).................(((((((.((((((......))).)))......((((.....))))))))))))))))........ ( -29.90) >DroSim_CAF1 35444 115 - 1 GCGC-UGCCUACUCGGAGGCGCAUUACUCCUUCAUAUAUAAAAAUAUUCUUAAAUGAUGGUGGAUUCUGUUCCAACCUAUAUUUCUCAAUUCGAGAUCGUUUAAGGCAAUAAACUU ((((-(.((.....)).))))).........................((((((((((.((((((......))).)))......((((.....)))))))))))))).......... ( -29.30) >DroYak_CAF1 27532 90 - 1 GUUUUUGCCUACUUUGAGGCGCCUUACUGCUCCAUAUGUAAAAAUAAUUCUAUAUG--------------------------UUCUCAAUUAGGGAUUGUUGAAGGCGAUGAACUU ((((..((((......))))(((((...((..((((((.((......)).))))))--------------------------.((((.....))))..))..)))))...)))).. ( -19.20) >consensus GCGC_UGCCUACUCGGAGGCGCAUUACUCCUCCAUAUAUAAAAAUAUUCUUAAAUGAUGGUGGAUUCUGUUCCAACCUAUAUUUCUCAAUUCGAGAUCGUUUAAGGCAAUAAACUU .....(((((....(((((.(.....).))))).................(((((((...((((......)))).........((((.....))))))))))))))))........ (-13.82 = -14.83 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:32 2006