Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,346,884 – 1,346,982 |
Length | 98 |
Max. P | 0.670619 |
Location | 1,346,884 – 1,346,982 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 91.44 |
Mean single sequence MFE | -33.36 |
Consensus MFE | -28.30 |
Energy contribution | -28.74 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 0.85 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1346884 98 - 20766785 CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU ..(.(((((..((((((((((....))))))))))..((------------------(((.((....)))))))))))).)(((((.(.(((((.....))))).).))))).... ( -34.60) >DroSec_CAF1 65158 98 - 1 CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU ..(.(((((..((((((((((....))))))))))..((------------------(((.((....)))))))))))).)(((((.(.(((((.....))))).).))))).... ( -34.60) >DroSim_CAF1 43352 98 - 1 CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUACGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU ..(.(((((..((((((((((....))))))))))....------------------....(((((...)))))))))).)(((((.(.(((((.....))))).).))))).... ( -32.20) >DroEre_CAF1 46339 115 - 1 CAGUUGUCCGUUGC-CUGGAGCCGGUUUCGGGCCAUUGCCAUGGCCAUUGCUGUUGCCAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU ..(.((((((..((-((((((....))))))))(((.((.(((((.((.((....)).)).))))).))))).)))))).)(((((.(.(((((.....))))).).))))).... ( -37.40) >DroYak_CAF1 33764 98 - 1 CAGUUGUCCGUUGCCCUGGAGCCGGUUUCGGGCCAUUGC------------------CAUUGCCAUUGCGUGGUGGGCAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU ((((.(((((..(((........)))..))))).)))).------------------.......((((((((((((.((....)))))))))...(.((....)).)))))).... ( -28.00) >consensus CAGUUGUCCGUUGGCCUGGAGCCGGUUUCGGGCCAUUGC__________________CAUUGCCAUUGCGUGGUGGACAUCAUUGCCGCCAUUAAGCUCUAAUGACCGUAAUAAAU ..(.(((((..((((((((((....))))))))))..........................(((((...)))))))))).)(((((.(.(((((.....))))).).))))).... (-28.30 = -28.74 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:07 2006