Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,144,950 – 4,145,044 |
Length | 94 |
Max. P | 0.635541 |
Location | 4,144,950 – 4,145,044 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 78.87 |
Mean single sequence MFE | -15.63 |
Consensus MFE | -11.28 |
Energy contribution | -11.40 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.48 |
Structure conservation index | 0.72 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4144950 94 + 20766785 GGAUGGAGGUUAAGGUUUGGAGACCAAGCACACACCCAGAAGAAAAAAACUUUUUUAACAUUUUCAAUUUUAUUUUGCUUAUUUUAUCUUUGCU ((((((((((....((((((...))))))....)))..((((((......))))))..........................)))))))..... ( -12.80) >DroSec_CAF1 10273 77 + 1 UGAUGGGGACUAAGGUUUGGAGACCAACCACACACCCAAAAGAAAAAAACUCUUUUAACAUUUAAAAUUUUAUUUUU----------------- .(((((((.....((((.(....).)))).....)))((((((.......))))))..))))...............----------------- ( -14.70) >DroSim_CAF1 11521 77 + 1 GGAUGGGGGUUAAGGCUUGGAGACCAAGCACACACCCAAAAGAAAAAAACUCUUUUAACAUUUAAAAUUUUAUUUUU----------------- (((((.((((....((((((...))))))....))))((((((.......))))))..)))))..............----------------- ( -19.40) >consensus GGAUGGGGGUUAAGGUUUGGAGACCAAGCACACACCCAAAAGAAAAAAACUCUUUUAACAUUUAAAAUUUUAUUUUU_________________ .(((((((......((((((...)))))).....)))((((((.......))))))..))))................................ (-11.28 = -11.40 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:29 2006