Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,139,135 – 4,139,254 |
Length | 119 |
Max. P | 0.740500 |
Location | 4,139,135 – 4,139,254 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -50.90 |
Consensus MFE | -39.16 |
Energy contribution | -40.48 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.87 |
Structure conservation index | 0.77 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4139135 119 + 20766785 CCUCGGGCAGGUAGGGCUGUGCGAUGGAUUGGCCGGCAUUUGCCAACCAGGUCCUCCGCAUCGCGUUCCUCUCAUCGGCAUUGUGCGGUGCGCUUAGCACCAACACCAUGAGGAAGAGG (((((((.(((.((.((.(((((..(((((((..(((....)))..))).))))..))))).)).)))))))).((..(((.(((.(((((.....)))))..))).)))..)).)))) ( -51.80) >DroSec_CAF1 4262 119 + 1 CCUCGGGCAGGUAGGGCUGUGUGAGGGAUUGGCCGGCAUUUGCCAGCCAGGUGCUCCGCAUCGCGUUCCUCUCAUCGGAAUUGUGCGGUGCGCUGAGCACCAACACCAUAAGGAAGAGU (((((.((((......)))).)))))...((((.(((....))).))))((((((((((((((((((((.......)))))...))))))))..)))))))....((....))...... ( -57.20) >DroEre_CAF1 4254 119 + 1 CCUCGGGAAGAUAGGGCUGUGCGAGGGAUUGGCCCGCACUCGCCAGCCAGGUGCUCCGCAUCGCUUGCCUCUCCUCUGCAUUGUGUGGUGCGCUGAGCACCAACACCAUAAGGAAGAGG ((((..........(((((.(((((((......))...)))))))))).(((((((((((((((.(((.........)))....))))))))..)))))))....((....))..)))) ( -50.70) >DroYak_CAF1 4156 119 + 1 CCUCGGGAAAAUAGGGCUGUGCAAGAGAUUGGCCCGCAUUUGCCAGCCAGGUGCUCCGCAUCGCGUUCCUCUCAUCUGCAUUGUGUGGUGCGCUGAGCACCAACACCAUAAGGAAGAGG ((((((((....((.((.((((..(((.(((((..((....))..)))))...))).)))).)).))..)))).(((..((.(((((((((.....))))).)))).))..))).)))) ( -43.90) >consensus CCUCGGGAAGAUAGGGCUGUGCGAGGGAUUGGCCCGCAUUUGCCAGCCAGGUGCUCCGCAUCGCGUUCCUCUCAUCGGCAUUGUGCGGUGCGCUGAGCACCAACACCAUAAGGAAGAGG (((..((.......(((((.(((((((.....)))....))))))))).((((((((((((((((((((.......)))))...))))))))..)))))))....))...)))...... (-39.16 = -40.48 + 1.31)
Location | 4,139,135 – 4,139,254 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -47.25 |
Consensus MFE | -38.35 |
Energy contribution | -38.60 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.81 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.739172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4139135 119 - 20766785 CCUCUUCCUCAUGGUGUUGGUGCUAAGCGCACCGCACAAUGCCGAUGAGAGGAACGCGAUGCGGAGGACCUGGUUGGCAAAUGCCGGCCAAUCCAUCGCACAGCCCUACCUGCCCGAGG ((((...((((((((((((((((.....)))))....)))))).)))))(((...((..((((..(((..((((((((....)))))))).)))..))))..))....)))....)))) ( -52.10) >DroSec_CAF1 4262 119 - 1 ACUCUUCCUUAUGGUGUUGGUGCUCAGCGCACCGCACAAUUCCGAUGAGAGGAACGCGAUGCGGAGCACCUGGCUGGCAAAUGCCGGCCAAUCCCUCACACAGCCCUACCUGCCCGAGG .(((.........((((.(((((((..((((.(((....((((.......)))).))).)))))))))))((((((((....)))))))).......)))).((.......))..))). ( -47.00) >DroEre_CAF1 4254 119 - 1 CCUCUUCCUUAUGGUGUUGGUGCUCAGCGCACCACACAAUGCAGAGGAGAGGCAAGCGAUGCGGAGCACCUGGCUGGCGAGUGCGGGCCAAUCCCUCGCACAGCCCUAUCUUCCCGAGG ((((.........((((.(((((.....)))))))))......(((((..(((..((((.(.(((.....(((((.((....)).))))).))))))))...)))...)))))..)))) ( -47.20) >DroYak_CAF1 4156 119 - 1 CCUCUUCCUUAUGGUGUUGGUGCUCAGCGCACCACACAAUGCAGAUGAGAGGAACGCGAUGCGGAGCACCUGGCUGGCAAAUGCGGGCCAAUCUCUUGCACAGCCCUAUUUUCCCGAGG ((((((.(((((.((((.(((((.....))))))))).))).))..))))))...((..(((((((....(((((.((....)).)))))..))).))))..))............... ( -42.70) >consensus CCUCUUCCUUAUGGUGUUGGUGCUCAGCGCACCACACAAUGCAGAUGAGAGGAACGCGAUGCGGAGCACCUGGCUGGCAAAUGCCGGCCAAUCCCUCGCACAGCCCUACCUGCCCGAGG ((((((((((...((((.(((((.....)))))))))....(....).)))))).((..((((..(....((((((((....))))))))...)..))))..))...........)))) (-38.35 = -38.60 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:26 2006