Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,139,009 – 4,139,129 |
Length | 120 |
Max. P | 0.500000 |
Location | 4,139,009 – 4,139,129 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.42 |
Mean single sequence MFE | -44.77 |
Consensus MFE | -36.28 |
Energy contribution | -36.52 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -1.39 |
Structure conservation index | 0.81 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4139009 120 - 20766785 UUUAUCUUCCGACAUUCAACGCCCAGGGCCACUUGCAGGUGGAGCUGGUGGCGGAGCAGGCGAGCCGGCUAAGGCAGUACACGAAUUGGCAGCAAAGCCUGCUGACGGAAGGUCCUCCAA ...((((((((........(((((((..(((((....)))))..)))..)))).(((((((..((..(((((..(.......)..))))).))...)))))))..))))))))....... ( -49.10) >DroSec_CAF1 4136 120 - 1 UUUAUCUUCCGACAUUCAACGCCCAAGGCCACUUGCAGGUGGAGCUGGUGGCGGAGCAGGCGAGCCGGCUAAGGCAGUACACGAAUUGGCAGCAAAGUCUGCUGACGGAAGAUCCUCCAA ...((((((((........(((((.((.(((((....)))))..)).).)))).(((((((..((..(((((..(.......)..))))).))...)))))))..))))))))....... ( -45.10) >DroEre_CAF1 4128 120 - 1 UCUAUCUUCCGGCAUUUAACGCCAAUGGCCACAUGCAGAUGGAGCUGGUUGCGGAGCAGGCGAGCCGCCUGAGGGAGUACACGAAUUGGCAGAAAACCCUGCUGACGGAAGAUCCCCCAA (((((((...(((.......))).(((....)))..)))))))((.....))((..((((((...)))))).((((.....((..(..((((......))))..))).....)))))).. ( -39.50) >DroYak_CAF1 4030 120 - 1 UUUAUCUUCCGGCAUUCAACGCCAAUGGCCACUUGCAGGUGGAGCUGGUUGCGGAGCAGGCGAGCCGCCUGAGGCAGUACACGGAUUGGCAAAAAAGGCUGCUGGCGGAAGAUCCACCAA ...((((((((........)((((..((((.....(((((((.(((.(((....))).)))...))))))).(.((((......)))).)......))))..)))))))))))....... ( -45.40) >consensus UUUAUCUUCCGACAUUCAACGCCAAUGGCCACUUGCAGGUGGAGCUGGUGGCGGAGCAGGCGAGCCGCCUAAGGCAGUACACGAAUUGGCAGAAAAGCCUGCUGACGGAAGAUCCUCCAA ...((((((((...(((..((((.....(((((....))))).(((........))).)))).(((......))).......)))(..((((......))))..)))))))))....... (-36.28 = -36.52 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:24 2006