Locus 984

Sequence ID 2R_DroMel_CAF1
Location 4,138,243 – 4,138,362
Length 119
Max. P 0.953968
window1749

overview

Window 9

Location 4,138,243 – 4,138,362
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -36.85
Consensus MFE -33.86
Energy contribution -33.30
Covariance contribution -0.56
Combinations/Pair 1.18
Mean z-score -1.51
Structure conservation index 0.92
SVM decision value 1.44
SVM RNA-class probability 0.953968
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4138243 119 - 20766785
AGGGACAUUCAUGACGGUGAACUCUGCAGUGGCAUUGGUUCGAGUAUAUUGUCCGAUUACUAUUACGAUUGGACGAGAACAGCGGACAAAUGUUGCGACAGCUUAGUAGCGUAGUCGUG
.........((((((..((.((((((..(..(((((.(((((......((((((((((........))))))))))......))))).)))))..)..)))...)))..))..)))))) ( -39.40)
>DroSec_CAF1 3369 119 - 1
AGGGACAUCCAUGACGGUGAACUCUGCAGUGGCAUUGGUUCGAGCAUAUUGUCCGAUUACUAUUACGAUUGGACGAGAACAGCGGACAAAUGCUGCGACAGCUUAGUAGCGUAGCAGUA
.((..((((......))))..))((((.(..(((((.(((((......((((((((((........))))))))))......))))).)))))..)....(((....)))...)))).. ( -40.50)
>DroSim_CAF1 3054 119 - 1
AGGGACAUCCAUGACGGUGAACUCUGCAGUGGCAUUGGUUCGAGCAUACUGUCCGAUUACUAUUACGAUUGGACGAGAACAGCGGACAAAUGCUGCGACAGCUUAGUAGCGUAGCCAUA
.((..((((......))))....((((.(..(((((.(((((.......(((((((((........))))))))).......))))).)))))..)....(((....)))))))))... ( -37.04)
>DroEre_CAF1 3362 119 - 1
AGAGACAUCCACGACGGUGAAUUAUGCAGUGGCAUUGGCUCGAGCAUAUUGUCUGAUUACUAUUACGAUUGGACGAGAACAGCGGACAAAUGCUGCGAUAGCUUAGUAGUGUAGCUAUG
((..((((.(((....))).((((.((.(..(((((.(..((......(((((..(((........)))..)))))......))..).)))))..)....)).)))).))))..))... ( -30.60)
>DroYak_CAF1 3264 119 - 1
AGGGACAUUCACGAUGGUGAACCAUGCAGUGGCAUUGGUUCGAGCAUAUUGUCUGAUUACUAUUACGAUUGGACGAGAACAGCGGACAAAUGCUGCGACAGCUUAGUAGUGUAGCAAUG
.(..(((((.((.((((....))))((.(..(((((.(((((......(((((..(((........)))..)))))......))))).)))))..)....))...)))))))..).... ( -36.70)
>consensus
AGGGACAUCCAUGACGGUGAACUCUGCAGUGGCAUUGGUUCGAGCAUAUUGUCCGAUUACUAUUACGAUUGGACGAGAACAGCGGACAAAUGCUGCGACAGCUUAGUAGCGUAGCAAUG
.((..((((......))))..))((((.(..(((((.(((((......((((((((((........))))))))))......))))).)))))..)....(((....)))))))..... (-33.86 = -33.30 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:23 2006