Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,135,848 – 4,135,944 |
Length | 96 |
Max. P | 0.893160 |
Location | 4,135,848 – 4,135,944 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.47 |
Mean single sequence MFE | -14.47 |
Consensus MFE | -13.31 |
Energy contribution | -13.34 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.40 |
Structure conservation index | 0.92 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.893160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4135848 96 - 20766785 UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU----AUAUAUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU ....(((((((((((((..............((.((((..((((((((...----.)))))))).)))).))..........)))))))))))))..... ( -16.45) >DroSec_CAF1 997 92 - 1 UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU--------AUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU ....(((((((((((((..(((((................)))))......--------...........((......))..)))))))))))))..... ( -13.99) >DroSim_CAF1 661 92 - 1 UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU--------AUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU ....(((((((((((((..(((((................)))))......--------...........((......))..)))))))))))))..... ( -13.99) >DroEre_CAF1 973 90 - 1 UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUA----------UAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU ....(((((((((((((..(((((................))))).....----------..........((......))..)))))))))))))..... ( -13.99) >DroYak_CAF1 982 90 - 1 UAGCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUA----------UAUAUCUUACGAGCAAAAUCAGCGUAAAUCAAAAACAAUU ..(.(((((((((((((..(((((................))))).....----------..........((......))..)))))))))))))).... ( -14.19) >DroAna_CAF1 4705 99 - 1 U-UUUUUUUGGUUUAUGAAACACGAAACAAAUCUUAAGCCUGUGUCUAUAUAUAUAUAUAUAUAUCUUACGAGCAUAAUCAGCGAAAAUCAAAAACAAUC .-..((((((((((.(((.....((......))....((.((((..(((((((....)))))))...)))).))....)))....))))))))))..... ( -14.20) >consensus UAUCUUUUUGGUUUAUGAAACACAAAACAAAUCUUAAGCCUGUGUGUAUAU________AUAUAUCUUACGAGCAUAAUCAGCGUAAAUCAAAAACAAUU ....(((((((((((((..(((((................))))).........................((......))..)))))))))))))..... (-13.31 = -13.34 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:21 2006