Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,346,735 – 1,346,844 |
Length | 109 |
Max. P | 0.779108 |
Location | 1,346,735 – 1,346,844 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 67.45 |
Mean single sequence MFE | -38.24 |
Consensus MFE | -12.80 |
Energy contribution | -16.16 |
Covariance contribution | 3.36 |
Combinations/Pair | 1.31 |
Mean z-score | -1.98 |
Structure conservation index | 0.33 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1346735 109 - 20766785 CAGUUACAGUAGCGCCAUACCAGUCCGCCCAUACAUGGGGAUUUGAAUUU-GGGCGGUUGGGUGGCGCACGGACCCUU-UGAGGUG---------AAAAACAAAGGGCUAUUGUUGCAUU ..((.(((((((((((((.((((.(((((((..((........))....)-))))))))))))))))).....(((((-((...(.---------...).))))))).)))))).))... ( -47.30) >DroSec_CAF1 65017 101 - 1 CAGCUACAGUAGCGCCACGCCAGUCCGCCCAUACAUGGCGAUUUGAAUUU-GGGCGGUUGGGCG---UUUGGG------UGCGGUG---------AAAAACAAAGGGCUAUUGUUGCAUU ..((.((((((((.(((((((...(((((((..((........))....)-))))))...))))---)(((..------(......---------..)..))).)))))))))).))... ( -41.20) >DroSim_CAF1 43211 101 - 1 CAGCUACAGUAGCGCCACACCAGUCCGCCCAUACAUGGGGAUUUGAAUUU-GGGCGGUUGGGCG---UUUGGG------UGCGGUG---------AAAAACAAAGGGCUAUUGUUGCAUU ..((.((((((((.((...((((.(((((((..((........))....)-)))))))))).((---(.....------.)))...---------.........)))))))))).))... ( -38.10) >DroEre_CAF1 46200 100 - 1 AGGCUACAGUGACGCCUUGCCAGGCCGGGCAUACAUGGGGAUUGGAA------------------UUCACGGAUCCU--UGCGGUGGCGAGGCCCAAAGACAAAAGGGUUCUGUUGCAUU ..((.((((.(((((((((((..(((((.....)..(((((((.(..------------------....).))))))--).))))))))))))((..........))))))))).))... ( -36.00) >DroYak_CAF1 33604 120 - 1 AAGUUACAGUAACGCUAUGCUAGCACGGGCAUGUAUAGGGAUUUUAAUUUCGGGAAGUUGGGGGCUUCGCAGACCCUUUUGCAGUGGAGAGGCACGAACAACAAAGGGCUUUGUUGCAUU ........(((((.((((((..((....))..)))))).............(.(((((.....))))).)((.((((((((..(((......)))...))..))))))))..)))))... ( -28.60) >consensus CAGCUACAGUAGCGCCAUGCCAGUCCGCCCAUACAUGGGGAUUUGAAUUU_GGGCGGUUGGGCG___CACGGA_CCU__UGCGGUG_________AAAAACAAAGGGCUAUUGUUGCAUU ..((.((((((((.((...((((.((((((.....................))))))))))......(((.(.........).)))..................)))))))))).))... (-12.80 = -16.16 + 3.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:06 2006