Locus 979

Sequence ID 2R_DroMel_CAF1
Location 4,132,307 – 4,132,400
Length 93
Max. P 0.638517
window1742

overview

Window 2

Location 4,132,307 – 4,132,400
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.20
Mean single sequence MFE -21.99
Consensus MFE -11.78
Energy contribution -11.84
Covariance contribution 0.06
Combinations/Pair 1.32
Mean z-score -1.61
Structure conservation index 0.54
SVM decision value 0.22
SVM RNA-class probability 0.638517
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4132307 93 + 20766785
------------------------AAC--UG-UCCACUCCAGUCCGCGCGCACCUCGAUCUAUACCAGCAUUUACCUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUCCUGGGCAUUGAA
------------------------...--((-((((.....((....))(((.((((((.....((((((........)))....)))..)))))).))).........))))))..... ( -20.30)
>DroGri_CAF1 4494 116 + 1
AUGUC----UAUCUCUAUAUUUCGCACUCUCUGUUUCUGCAGUCUGCACGCACCUCGAUUUAUAGCAGCAUUUACAUUUGCCUGCUGGCCAUUGAGCUGCUCUUUCUGCUGGGAAUCGAA
.....----..((((........(((....((((....))))..)))..(((.((((((...((((((((........)).))))))...)))))).)))..........))))...... ( -29.40)
>DroEre_CAF1 4122 93 + 1
------------------------AAC--UU-GCCCCUCCAGUCCGCCCGCACCUCGAUCUAUACCAGCAUUUACCUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUACUUGGCAUUGAA
------------------------...--.(-(((.....(((......(((.((((((.....((((((........)))....)))..)))))).))).......))).))))..... ( -17.42)
>DroWil_CAF1 39095 95 + 1
------------------------AACUCUU-UUUACUUUAGUCCGCCCGAACUUCCAUCUAUAGCAACAUUUAUAUUUGCCUCUUGGCCAUUGAGCUGCUCUUUCUGCUGGGCAUUGAA
------------------------.......-.............((((((.......))...((((............(((....)))....(((...)))....))))))))...... ( -15.10)
>DroYak_CAF1 4139 93 + 1
------------------------AAC--UG-UCCACUCCAGUCCGCCCGCACCUCGAUCUAUACCAGCAUUUACCUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUACUGGGCAUUGAA
------------------------.((--((-.......))))..(((((((.((((((.....((((((........)))....)))..)))))).)))..........))))...... ( -21.20)
>DroMoj_CAF1 4532 120 + 1
UUCGCUCACACUCGCUCUACCUCUCUUUCUUUCUUUCUGCAGUCUGCUCGCACCUCGAUCUAUAGCAGCAUUUACAUUUGCCUGCUGGCCAUUGAGCUGCUCUUUCUGCUGGGAAUUGAA
...((........))...........(((.(((((...((((.......(((.((((((...((((((((........)).))))))...)))))).))).....)))).)))))..))) ( -28.50)
>consensus
________________________AAC__UU_UCCACUCCAGUCCGCCCGCACCUCGAUCUAUACCAGCAUUUACAUUUGCCUCCUGGCCAUCGAGCUGCUCUUUCUGCUGGGCAUUGAA
.....................................((((((......(((.((((((........(......)....(((....))).)))))).))).......))))))....... (-11.78 = -11.84 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:17 2006