Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,123,188 – 4,123,283 |
Length | 95 |
Max. P | 0.984513 |
Location | 4,123,188 – 4,123,283 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -18.33 |
Consensus MFE | -15.45 |
Energy contribution | -16.03 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.09 |
Mean z-score | -2.01 |
Structure conservation index | 0.84 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4123188 95 + 20766785 ACUCUUUGCCAAAGUCGUAAAUCUGCCAUCGAAUCGGUAUUAAUUUAGAUACCGCCCCUUUGGCUUAUUUACCCAACGUUUAUUGACUCCAAUUG ............((((((((((..((((......(((((((......)))))))......))))..))))))............))))....... ( -19.80) >DroSec_CAF1 11040 87 + 1 --------CCAAAGUCGUAAAUCUGCCAUCGAAUCGGUAUUAAUUUAGAUACCGCCCCUUUGGCUUAUUUACCCAACGUUUAUUGACUCCAAUUG --------....((((((((((..((((......(((((((......)))))))......))))..))))))............))))....... ( -19.80) >DroSim_CAF1 3453 87 + 1 --------CCAAAGUCGUAAAUCUGCCAUCGAAUCGGUAUUAAUUUAGAUACCGCCCCUUUGGCUUAUUUACCCAACGUUUAUUGACUCCAAUUG --------....((((((((((..((((......(((((((......)))))))......))))..))))))............))))....... ( -19.80) >DroEre_CAF1 4781 94 + 1 ACUCUUUGCCAAAGUCGUAAAUCUGCCAUCGAAUCGGUAUUAAUUUAGAUACCGCC-CUCUGGCUUAUUUACCCAACGUUUAUUGACUCCAAUUG ............((((((((((..((((......(((((((......)))))))..-...))))..))))))............))))....... ( -18.70) >DroYak_CAF1 3075 94 + 1 ACUCUUUGCCAAAGUCGUAAAUCUGCCAUCGAAUCGGUAUUAAUUUAGAUACCGGC-CUCUGGCUUAUUUACCCAACGUUUAUUGACUCCAAUUG ............((((((((((..((((..((.((((((((......)))))))).-.))))))..))))))............))))....... ( -19.90) >DroAna_CAF1 2335 93 + 1 CCUCGCCGCC-GAGUCGUAAAUCUUCCAUCCAAUCAUUAUUCAUUUAUAUAUCCGCUGUUUGGCUAAUUUCUCGAAUGUUUAUUGACUCCAAUU- ..........-(((((((((((.(((...........(((......))).....(((....))).........))).))))).)))))).....- ( -12.00) >consensus ACUCUUUGCCAAAGUCGUAAAUCUGCCAUCGAAUCGGUAUUAAUUUAGAUACCGCCCCUUUGGCUUAUUUACCCAACGUUUAUUGACUCCAAUUG ............((((((((((..((((..(...(((((((......)))))))...)..))))..))))))............))))....... (-15.45 = -16.03 + 0.58)
Location | 4,123,188 – 4,123,283 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 86.72 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -22.20 |
Energy contribution | -22.73 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.15 |
Mean z-score | -2.52 |
Structure conservation index | 0.90 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4123188 95 - 20766785 CAAUUGGAGUCAAUAAACGUUGGGUAAAUAAGCCAAAGGGGCGGUAUCUAAAUUAAUACCGAUUCGAUGGCAGAUUUACGACUUUGGCAAAGAGU ...(..(((((......(....)((((((..((((..(((.((((((........)))))).)))..))))..)))))))))))..)........ ( -27.10) >DroSec_CAF1 11040 87 - 1 CAAUUGGAGUCAAUAAACGUUGGGUAAAUAAGCCAAAGGGGCGGUAUCUAAAUUAAUACCGAUUCGAUGGCAGAUUUACGACUUUGG-------- ...(..(((((......(....)((((((..((((..(((.((((((........)))))).)))..))))..)))))))))))..)-------- ( -26.60) >DroSim_CAF1 3453 87 - 1 CAAUUGGAGUCAAUAAACGUUGGGUAAAUAAGCCAAAGGGGCGGUAUCUAAAUUAAUACCGAUUCGAUGGCAGAUUUACGACUUUGG-------- ...(..(((((......(....)((((((..((((..(((.((((((........)))))).)))..))))..)))))))))))..)-------- ( -26.60) >DroEre_CAF1 4781 94 - 1 CAAUUGGAGUCAAUAAACGUUGGGUAAAUAAGCCAGAG-GGCGGUAUCUAAAUUAAUACCGAUUCGAUGGCAGAUUUACGACUUUGGCAAAGAGU ...(..(((((......(....)((((((..((((..(-((((((((........)))))).)))..))))..)))))))))))..)........ ( -28.10) >DroYak_CAF1 3075 94 - 1 CAAUUGGAGUCAAUAAACGUUGGGUAAAUAAGCCAGAG-GCCGGUAUCUAAAUUAAUACCGAUUCGAUGGCAGAUUUACGACUUUGGCAAAGAGU ...(..(((((......(....)((((((..((((..(-(.((((((........))))))..))..))))..)))))))))))..)........ ( -25.90) >DroAna_CAF1 2335 93 - 1 -AAUUGGAGUCAAUAAACAUUCGAGAAAUUAGCCAAACAGCGGAUAUAUAAAUGAAUAAUGAUUGGAUGGAAGAUUUACGACUC-GGCGGCGAGG -.((((....))))......(((..(((((..(((..(((((..(((........))).)).)))..)))..))))).)))(((-(....)))). ( -13.70) >consensus CAAUUGGAGUCAAUAAACGUUGGGUAAAUAAGCCAAAGGGGCGGUAUCUAAAUUAAUACCGAUUCGAUGGCAGAUUUACGACUUUGGCAAAGAGU ...(..(((((......(....)((((((..((((..(((.((((((........)))))).)))..))))..)))))))))))..)........ (-22.20 = -22.73 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:13 2006