Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,121,589 – 4,121,693 |
Length | 104 |
Max. P | 0.837014 |
Location | 4,121,589 – 4,121,693 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.32 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -22.56 |
Energy contribution | -22.20 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -1.59 |
Structure conservation index | 0.81 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769682 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4121589 104 + 20766785 UAUGGUGUUACGAUGAAAUGGAGUUCCUGCAGCCCAUACUGCAGGAGCAGAUCUUCAACAAGAUCAGCAAGGUAAAGGGUUGC----GAUAUAAGAUAGCCUCUGGAU (((..((((.............((((((((((......)))))))))).((((((....))))))))))..))).((((((((----.......).))))).)).... ( -31.20) >DroSec_CAF1 9468 103 + 1 UAUGGUGUUACGAUGAAAUGGAGUUCCUGCAGCCCAUUUUACAGGAGCAGAUCUUCAACAAGAUCAGCAAGGUAAAGGGUGGC----GAUUAAAGAUAGC-UAAGGCU ...(((.((((........((....))(((.((((..(((((....((.((((((....)))))).))...))))))))).))----)..........).-))).))) ( -22.90) >DroSim_CAF1 1881 103 + 1 UAUGGUGUUACGACGAAAUGGAGUUCCUGCAGCCCAUUCUGCAGGAGCAGAUCUUCAACAAGAUCAGCAAGGUAAAGGGUCGC----GAUAUAAGAUAGC-UAAGGAU ....((((..((((........((((((((((......)))))))))).((((((....)))))).............)))).----.))))........-....... ( -32.30) >DroEre_CAF1 3193 103 + 1 UAUGGUGUUACGAUGAAAUGGAGUUCCUGCAGCCUAUUUUGCAGGAGCAGAUCUUCAACAAGAUCAGCAAGGUAAUGGCUCGC----GAUGUACGACAGC-UCUGUAU (((((.(((((...........((((((((((......)))))))))).((((((....))))))......)))))((((..(----(.....))..)))-)))))). ( -28.70) >DroYak_CAF1 1492 104 + 1 UAUGGUGCUACGAUGAAAUGGAAUUCCUGCAACCAAUUUUGCAGGAGCAGAUCUUCAACAAGAUCAGCAAGGUAAUGCGUCGAA---AAUGUACGUUAAC-UUUGUAU ....((((..(((((.........((((((((......))))))))((.((((((....)))))).)).........)))))..---...))))......-....... ( -27.90) >DroMoj_CAF1 26603 100 + 1 UGUGGUGCUACGAUGAGCUGGAGUUUCUACAGAAGAUUCUUCAGGAGCAGAUCUUCAAUAAGAUCAGCAAGGUGAGUAGUAGGAGUAGAUU--AAAUAG---A---AU .....((((((......((((((..(((.....)))..))))))..((.((((((....)))))).)).......))))))..........--......---.---.. ( -24.40) >consensus UAUGGUGUUACGAUGAAAUGGAGUUCCUGCAGCCCAUUCUGCAGGAGCAGAUCUUCAACAAGAUCAGCAAGGUAAAGGGUCGC____GAUAUAAGAUAGC_UAUGGAU (((..((((.............((((((((((......)))))))))).((((((....))))))))))..))).................................. (-22.56 = -22.20 + -0.36)
Location | 4,121,589 – 4,121,693 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.32 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -18.89 |
Energy contribution | -19.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.20 |
Mean z-score | -1.80 |
Structure conservation index | 0.81 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4121589 104 - 20766785 AUCCAGAGGCUAUCUUAUAUC----GCAACCCUUUACCUUGCUGAUCUUGUUGAAGAUCUGCUCCUGCAGUAUGGGCUGCAGGAACUCCAUUUCAUCGUAACACCAUA .....(((.............----...............((.((((((....)))))).))(((((((((....))))))))).))).................... ( -26.30) >DroSec_CAF1 9468 103 - 1 AGCCUUA-GCUAUCUUUAAUC----GCCACCCUUUACCUUGCUGAUCUUGUUGAAGAUCUGCUCCUGUAAAAUGGGCUGCAGGAACUCCAUUUCAUCGUAACACCAUA (((....-)))..........----((..((((((((...((.((((((....)))))).))....)))))..)))..)).((....))................... ( -20.60) >DroSim_CAF1 1881 103 - 1 AUCCUUA-GCUAUCUUAUAUC----GCGACCCUUUACCUUGCUGAUCUUGUUGAAGAUCUGCUCCUGCAGAAUGGGCUGCAGGAACUCCAUUUCGUCGUAACACCAUA .......-.............----(((((..........((.((((((....)))))).))((((((((......))))))))..........)))))......... ( -28.50) >DroEre_CAF1 3193 103 - 1 AUACAGA-GCUGUCGUACAUC----GCGAGCCAUUACCUUGCUGAUCUUGUUGAAGAUCUGCUCCUGCAAAAUAGGCUGCAGGAACUCCAUUUCAUCGUAACACCAUA .....(.-((..((((.....----))))))).((((...((.((((((....)))))).))(((((((........))))))).............))))....... ( -23.60) >DroYak_CAF1 1492 104 - 1 AUACAAA-GUUAACGUACAUU---UUCGACGCAUUACCUUGCUGAUCUUGUUGAAGAUCUGCUCCUGCAAAAUUGGUUGCAGGAAUUCCAUUUCAUCGUAGCACCAUA .......-((((..(((.(((---(((((((((......))).......))))))))).)))((((((((......))))))))..............))))...... ( -24.91) >DroMoj_CAF1 26603 100 - 1 AU---U---CUAUUU--AAUCUACUCCUACUACUCACCUUGCUGAUCUUAUUGAAGAUCUGCUCCUGAAGAAUCUUCUGUAGAAACUCCAGCUCAUCGUAGCACCACA ..---.---......--..(((((................((.((((((....)))))).))....((((...)))).))))).......(((......)))...... ( -16.20) >consensus AUCCAUA_GCUAUCUUAAAUC____GCGACCCUUUACCUUGCUGAUCUUGUUGAAGAUCUGCUCCUGCAAAAUGGGCUGCAGGAACUCCAUUUCAUCGUAACACCAUA .................................((((...((.((((((....)))))).))((((((((......)))))))).............))))....... (-18.89 = -19.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:11 2006