Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,119,059 – 4,119,174 |
Length | 115 |
Max. P | 0.594089 |
Location | 4,119,059 – 4,119,174 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.11 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -16.41 |
Energy contribution | -17.63 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.96 |
Structure conservation index | 0.60 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4119059 115 + 20766785 --AAUUUUAAAUGGUUUUGUAUUAUUUUCUACCCAUAUCA---GUGGCUAAUUACUCAAAGAUACAUUUCGAAUUGGUUUUAUUUUGAGAAAUUAGCCUGGUGGGGUAUAUCACGCUUCG --......(((((((.....)))))))..(((((.(((((---..((((((((.(((((((...((........))......))))))).))))))))))))))))))............ ( -27.10) >DroSim_CAF1 32094 115 + 1 --AAUGG---AAAGUUUUAUAUUACUUUCUACCCAUAUCAGCAGUGGCUAAUUACUCAAAGACACAUUUCGAAUUUGUUUUAAUCUGAGGCAUUAGCCUGGUGGGGUAUAUUACGCUUCG --...((---(((((........)))))))((((.(((((.....(((((((..((((((((((.((.....)).))))))....))))..))))))))))))))))............. ( -29.40) >DroYak_CAF1 16102 110 + 1 CGAAUGG---AAAGAUUC--UUUACGUUCUACCCAUAUCA---GUGACUAAUUACUCAAAGACACAUUUUGAGUUUGUUUUAAUCUGAUA-AUUACCCU-GUGGGGUAUUUUACGCUUGG .(((((.---((((...)--))).)))))...((((((((---(.....(((.((((((((.....))))))))..))).....))))))-..(((((.-...))))).........))) ( -25.50) >consensus __AAUGG___AAAGUUUU_UAUUACUUUCUACCCAUAUCA___GUGGCUAAUUACUCAAAGACACAUUUCGAAUUUGUUUUAAUCUGAGA_AUUAGCCUGGUGGGGUAUAUUACGCUUCG .............................(((((.(((((.....(((((((..((((((((((.((.....)).))))))....))))..)))))))))))))))))............ (-16.41 = -17.63 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:09 2006